Clinically early-stage CSPα mutation carrier exhibits remarkable terminal stage neuronal pathology with minimal evidence of synaptic loss
© Benitez et al. 2015
Received: 28 September 2015
Accepted: 13 November 2015
Published: 26 November 2015
Autosomal dominant adult-onset neuronal ceroid lipofuscinosis (AD-ANCL) is a multisystem disease caused by mutations in the DNAJC5 gene. DNAJC5 encodes Cysteine String Protein-alpha (CSPα), a putative synaptic protein. AD-ANCL has been traditionally considered a lysosomal storage disease based on the intracellular accumulation of ceroid material. Here, we report for the first time the pathological findings of a patient in a clinically early stage of disease, which exhibits the typical neuronal intracellular ceroid accumulation and incipient neuroinflammation but no signs of brain atrophy, neurodegeneration or massive synaptic loss. Interestingly, we found minimal or no apparent reductions in CSPα or synaptophysin in the neuropil. In contrast, brain homogenates from terminal AD-ANCL patients exhibit significant reductions in SNARE-complex forming presynaptic protein levels, including a significant reduction in CSPα and SNAP-25. Frozen samples for the biochemical analyses of synaptic proteins were not available for the early stage AD-ANLC patient. These results suggest that the degeneration seen in the patients with AD-ANCL reported here might be a consequence of both the early effects of CSPα mutations at the cellular soma, most likely lysosome function, and subsequent neuronal loss and synaptic dysfunction.
The neuronal ceroid lipofuscinoses (NCLs) are the most common group of inherited neurodegenerative diseases in children . NCLs are a genetically, clinically and pathologically heterogeneous group of disorders, unified by the presence of intracellular accumulation of autofluorescent ceroid-lipofuscin aggregates (a complex mixture of proteins, lipids and metals) [1, 2]. The age at onset of clinical symptoms and differences in ultrastructural features of the storage material underlie the nosological spectrum of NCLs [1, 2]. NCLs are traditionally considered lysosomal storage diseases (LSD), even though several of the mutant proteins are not primary lysosomal proteins. The function of some of these proteins is largely unknown and their relationship to lysosome function is unclear .
Adult-onset NCLs (ANCL) represent up to 10 % of NCL cases . ANCL patients exhibit the typical autofluorescent granular osmiophilic deposits (GROD) in neurons and skin cells [4, 5]. In recent years, the progress in sequencing technology has supported the identification of a plethora of novel disease-causing genes in multiple families with ANCL-like clinical features and GROD-type storage material. This indicates that the genetic architecture of ANCL is more varied and complex than previously thought .
Most NCLs have a recessive pattern of inheritance; one exception is the autosomal dominant, adult onset neuronal ceroid lipofuscinosis (AD-ANCL) (MIM #162350). AD-ANCL patients are asymptomatic until around the third decade . The first symptom is usually new-onset seizures (tonic-clonic type) followed by rapid cognitive decline, motor impairment and finally, death in the absence of visual impairments . The primary clinical and pathological features of AD-ANCL include progressive and widespread neurodegenerative processes resulting in remarkable cortical and cerebellar atrophy . Nearly all of our current understanding of AD-ANCL is based on analysis of postmortem tissue from terminal cases. To our knowledge, there is no report characterizing both early and late pathology events of AD-ANCL cases.
AD-ANCL is caused by a heterozygous point mutation (p.L115R) and an in-frame codon deletion (p.L116Δ) in the DnaJ (Hsp40) homolog, subfamily C, member 5 (DNAJC5) gene [6–8]. The DNAJC5 gene encodes CSPα. CSPα is a cytosolic and membrane-bound co-chaperone with a putative neuroprotective function . The function of CSPα in the central nervous system is primarily deduced from data collected from CSPα-deficient mice and flies, which exhibit massive age-dependent neurodegeneration affecting mainly active neurons and photoreceptors [9, 10]. CSPα is widely considered a member of the presynaptic machinery responsible for proteostasis and synapse maintenance [11–13]. Defective synaptic soluble NSF attachment protein receptor (SNARE)-complex assembly, due mostly but not exclusively to the reduction in soluble NSF attachment protein-25 (SNAP-25) levels, appears to be responsible for the neurodegeneration seen in CSPα-deficient mice [10, 11, 14, 15]. There are approximately 20 additional proteins that demonstrate altered expression patterns in the absence of CSPα in mice  that can also be part of its pathogenic cascade.
The histological hallmark of AD-ANCL is the intracellular accumulation of autofluorescent storage material (AFSM) [4, 5]. Although there are similarities in the neurodegenerative process between AD-ANCL patients and CSPα-deficient mice, no ceroid accumulation has been reported in CSPα-deficient mice or flies [12, 16]. Currently, it is unknown how mutations in DNAJC5/CSPα result in the formation of AFSM. A dominant negative effect was initially proposed as the pathogenic mechanism for AD-ANCL-causing mutations in CSPα based on both its inheritance pattern and a reduction in neuropil CSPα staining in terminal AD-ANCL cases [7, 12, 17].
In this report, we describe the clinical and pathological features of a patient in a clinically early stage of the disease with all the pathological cellular changes found in terminal AD-ANCL cases but with no apparent reduction in CSPα or synaptophysin in the neuropil. In contrast, terminal AD-ANCL patients exhibit significant reductions of presynaptic protein levels, including a significant reduction of CSPα.
Materials and methods
DNAJC5-Exon4 (Forward, 5'-ggaaggcagtatccccacctggaac-3'; Reverse, 5'-cggcacagtgtcagtgccctcc-3') was amplified on Applied Biosystems (Applied Biosystems, Carlsbad, California, USA) 96-Well GeneAmp® PCR System 9700 Thermal Cyclers using a touchdown protocol. PCR products were amplified under the same conditions (25-μl volume containing 10× PfuUltra™ HF reaction buffer (Stratagene, La Jolla, California, USA), 5× Betaine (Sigma-aldrich, St Louis, USA), 100 μM each dNTP, 200 nM each primer, 0.4 PfuUltra™ High-Fidelity DNA Polymerase (Promega); PCR profile: 94 °C followed by 34 cycles of 45 s at 94 °C, 45 s at 62°, and 1 min at 72 °C). PCR product purification was completed with Exosap-IT (USB Corporation). Sequencing was performed both in forward and reverse direction using BigDye® Terminator v3.1 Cycle Sequencing Kit (ABI) on an ABI 3130 sequencer. Sequence traces were analyzed using Sequencher (v4.7, Gene Codes Corp, Ann Arbor, Michigan, USA).
After death, the consent for brain removal was obtained from next-of-kin. Briefly, the left hemibrain was preserved in 10 % phosphate-buffered formalin for neuropathologic assessment; the right hemibrain was snap frozen and stored at −80 °C for biochemical studies . Unfortunately, no flash frozen tissue was obtained from the early stage AD-ANCL patient. Tissue blocks were taken from the frontal, temporal, parietal, and occipital lobes, amygdala, hippocampus, basal ganglia, thalamus, brainstem, cerebellum, and spinal cord when available. Following formic acid (95 %) pretreatment for 5 min, histology was undertaken and included hematoxylin and eosin and a modified Bielschowsky silver impregnation. Immunohistochemistry was performed using the following primary antibodies: glial fibrillary acidic protein (GFAP, 1:2,000; Dako, Glostrup, Denmark), ionized calcium-binding adapter molecule 1 (Iba1, 1:2,000; Wako Chemicals USA Inc., Richmond, VA), synaptophysin (1:1,000; Abcam, Cambridge, MA) and CSPα/DNAJC5 (AB1576, 1:1,000, Millipore, Temecula, CA).
Densitometry of synaptophysin and CSPα/DNAJC5 immunoreactivity was assessed in the cortical ribbon of the middle frontal gyrus, an area available in all mutation carriers and non-carriers, and included the gyral crest and sulcal depth. The intensity of immunoreactivity (luminance measured as arbitrary values) was determined following immunohistochemistry of all cases treated in a single batch using Densita (MicroBrightField, Inc., Williston, VT) software.
Small pieces of tissues from the right palm of formalin-fixed tissue were processed for transmission electron microscopy as previously described . Briefly, specimens were fixed overnight in 3 % glutaraldehyde in Sorensen’s buffer, osmicated, dehydrated in graded alcohols and embedded in Epon. Thin sections were cut on an ultramicrotome, collected on mesh grids, stained with lead citrate and uranyl acetate and examined with a JEOL 1200 electron microscope.
Cells were lysed in radioimmune precipitation assay (RIPA) buffer (50 mM Tris–HCl, pH 7.4, 150 mM NaCl, 1 % Nonidet P-40 and 0.25 % sodium deoxycholate) plus 1X phenylmethanesulfonylfluoride (PMSF) and 1X complete protease inhibitor mixture (Sigma, St. Louis, MO) for 10 min on ice and then spun at 14,000 rpm for 10 min at 4 °C. Protein was subjected to electrophoresis and transferred to PDVF membrane (BIO-RAD, Hercules, CA). The primary antibodies were diluted as follows: CSPα (ADI-VAP-SV003-E; Enzo life science) 1:5000, HSC70/HSP73 (ADI-SPA-816; Enzo life science) 1:1000, Synaptobrevin/VAMP2 (104211, Synaptic System) 1:10000, Syntaxin-1 (110011, Synaptic System) 1:10000, SNAP-25 ( SMI81, Covance) 1:10000, Synaptophysin (ab8049, abcam) 1:5000, Flotillin (C-7, sc-133153, Santa Cruz Biotechnology) 1:5000, β-Actin (A1978, Sigma-Aldrich) 1:5000. The membranes were then incubated with secondary antibodies, horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG (KPL, Gaithersburg, MD) diluted 1:2000 in 4 % nonfat dry milk PBS-T for 1 h at room temperature. Signals were visualized using Lumigen ECL Ultra (TMA-6) (Lumigen, Southfield, MI). Densitometric semi-quantification was performed using ImageJ software (National Institutes of Health).
Analysis of Clinical Samples
Demographics of AD-ANCL cases and healthy controls
Age at death
Brain wt. (g)
Cause of death
Motor vehicle accident
Carcinoma of colon
Carcinoma of lung
All data are shown as means ± SEM. For comparison of two groups, Student’s unpaired two-tailed t test was used. Data were analyzed using GraphPad Prism, version 5.00 (San Diego, CA).
Mutation analyses of DNAJC5/CSPα/NCL4B
Sequencing analysis of exon 4 of the DNAJC5 gene revealed a coding variant heterozygous transversion change at position c.344 (c.344 T > G) (Fig. 1a) which results in a leucine-to-arginine amino acid substitution (Fig. 1b). This mutation was previously found in other members of the same family with terminal AD-ANCL [6, 7].
Clinical features of an early stage AD-ANCL patient
A member of a multigenerational family with AD-ANCL was evaluated as a research volunteer at age 30 and 33 years at the Knight Alzheimer's Disease Research Center, Washington University, St. Louis, Missouri, as part of the follow-up of family members. At both visits the patient was cognitively normal, had no neurological symptoms, and had an unremarkable neurological examination. Patient’s next evaluation was at 36 y, when patient reported experiencing multicolored visual hallucinations in the prior 12 months. More recently the patient reported apparent myoclonus affecting the upper extremities and had experienced several non-injurious falls. Three weeks prior to the assessment, patient had an accident while driving her automobile. The patient had no reported seizure episodes. The neurologic examination remained unremarkable and patient again was rated as cognitively normal. An awake electroencephalogram, however, showed bilateral epileptiform discharges. The patient was evaluated seven months later and began medication.
Neuropathology of an early stage AD-ANCL patient
No changes in levels of CSPα or synaptophysin in the brains of an early stage AD-ANCL patient
Changes in levels of synaptic proteins in the brains of terminal AD-ANCL patients
We previously predicted that the p.L115R mutation would dramatically decrease the affinity of CSPα for membranes . Here, we show that mutant CSPα-p.L115R reduces levels of CSPα in the cytosolic fraction by 95 % (0.05 ± 0.01 S.E., n = 6, p = 0.001, unpaired t-test) compared to controls, while the membrane-bound fraction (detergent soluble) is reduced by ~50 % (0.53 ± 0.03 S.E., n = 6, p = 0.004, unpaired t-test) in the occipital lobe of terminal AD-ANCL patients compared to controls (Fig. 6a). Detailed analysis of CSPα-deficient mice has shown that neurodegeneration in the absence of CSPα is a consequence of the defective function of SNAP-25 and SNARE binding proteins . Therefore, we examined whether the CSPα reduction found in terminal AD-ANCL patients was accompanied by changes in other synaptic proteins. We found a significant reduction in several SNARE-complex forming presynaptic proteins including, but not limited to a 59 % reduction in SNAP-25 levels, 41 % reduction in synaptobrevin/VAMP2 levels and a 43 % reduction in syntaxin 1 levels in brains of terminal AD-ANCL patients compared to controls. We also found a 36 % reduction in synaptophysin levels and no changes in CSPα’s partner, HSC70 levels (Fig. 6a). The reduction of the presynaptic proteins was similar across the different brain regions (frontal, parietal and temporal) or cerebellum among the AD-ANCL patients (Data not shown). No flash frozen tissue was obtained from the early stage AD-ANCL patient, which prevents us from performing the same biochemical analyses.
Neuronal cell death seems to be correlated with age of onset and duration of the disease in most NCLs . In AD-ANCL there is a remarkable neuronal depletion in the cortex of the frontal, parietal and temporal lobes of the AD-ANCL terminal cases . Here, we found minimal to no evidence of neuronal loss or cortex atrophy in a clinically early-stage patient with AD-ANCL in the examined areas.
Microgliosis and astrogliosis seems to be an early event, possibly even occurring before neuronal degeneration in several NLCs [19, 20] including adult forms , and remains remarkable in very advanced stages of neurodegeneration in the cerebral cortex [5, 19]. Here, we found microglial and astroglial activation in isolated areas surrounding the swollen neurons in the cortex of an early-stage AD-ANCL patient.
Here, we report that terminal AD-ANCL patients exhibit reductions in presynaptic proteins that form the SNARE complex including SNAP-25, VAMP2 and STX1 (Fig. 6a, b). A similar reduction in SNAP-25 was reported in CSPα-deficient mice [9, 10, 14] but unlike the findings in CSPα-deficient mice, terminal AD-ANCL patients exhibit similar HSC70 levels compared to control (Fig. 5b). Other LSDs also exhibit SNARE defects as a consequence of the primary lysosomal defects . Unfortunately, lysosome function has not been evaluated in CSPα-deficient mice [12, 16]. In contrast, CSPα-p.L115R induces dramatic changes in the soma that appear to precede the synaptic defects. This sequence of events has been reported in other LSDs where non-lysosomal mutant proteins affect the intracellular trafficking of proteins upstream or downstream of the lysosome, including synaptic proteins, subsequently producing synaptic dysfunction [22–24].
We have confirmed and extended the finding that postmortem brain samples from terminal AD-ANCL patients display a large reduction in CSPα levels compared to controls (Fig. 6a) [7, 17, 25]. Interestingly, the levels of membrane-bound CSPα are decreased 50 % in terminal AD-ANCL patients (Fig. 6a). CSPα hemizygous mice exhibit a 50 % reduction in the level of CSPα and are phenotypically normal . Assuming membrane-bound CSPα is the main functional fraction, this 50 % reduction alone would not explain the synaptic changes and neurodegeneration found in terminal AD-ANCL patients (Fig. 6a, b). This suggests that an additional mechanism other than an isolated reduction in CSPα levels is responsible for the neurodegeneration found in AD-ANCL. However, we cannot rule out the possibility that the overall reduction, up to one third of the control levels, in both soluble and membrane-bound CSPα found in AD-ANCL patients could be responsible for the synaptic defects seen.
We also found in brain homogenates from individual controls that there is a substantial amount of CSPα present in the soluble/cytosolic fraction (Fig. 6a). CSPα levels in this particular fraction are dramatically reduced in AD-ANCL patients (Fig. 6a). The cytosolic CSPα fraction extracts from the rat brain have been described to interact with HSC70 . The amount of soluble/cytosolic CSPα depends on both the cell type [27–29] and the activity of palmitoyl- transferases on CSPα . Thus, it is possible that human brain expression levels and types of palmitoyl- transferases vary in different cell types  or that palmitoyl- transferase activity is age-dependent resulting in a greater soluble/cytosolic CSPα fraction. We cannot rule out the possibility that this finding is an artifact or contamination from small vesicles in our detergent-free fraction. However, the CSPα levels found in three different individual controls strongly suggest that this is not an artifact (Fig. 6a). The role of soluble/cytosolic CSPα is not clearly defined since the most thoroughly studied is membrane-bound CSPα. However, CSPα exhibits both chaperone and co-chaperone activity that does not depend on its ability to bind the membrane.
The understanding of how mutations in a “synaptic” protein can lead to lysosome dysfunction is currently unclear. Lysosomes are dynamic organelles that receive and degrade macromolecules from secretory, endocytic, autophagic and phagocytic membrane-trafficking pathways . Lysosomes also serve as a common endpoint for multiple vesicle-based trafficking systems . CSPα is critical for maintaining vesicle-membrane fusion events . The fusion events between lysosomes and endosomes, phagosomes, autophagosomes or plasma membrane, are all mediated by the SNARE complexes . The main proteins forming these trans-SNARE complexes include syntaxin-7, syntaxin-8 (Q-SNARES) and vesicle-associated membrane protein-8 (VAMP8) and VAMP7 (R-SNARES), in addition to synaptosome-associated protein of 23 kDa (SNAP23), synaptotagmin-VII and Rab3a , some of which have been identified as CSPα’s partners . Terminal AD-ANCL patients exhibit significant reductions in SNARE-complex forming proteins (Fig. 6b). Thus, it is likely that dysfunctional CSPα affects the machinery that coordinates these lysosomal fusion events resulting in the formation of the ceroid aggregates and subsequent swelling of the cellular soma (cortical pyramidal neurons and palmar sweat gland) seen in AD-ANCL.
In this report, we describe the clinical and pathological features of a patient in a clinically early stage of AD-ANCL with all the pathological cellular changes found in terminal AD-ANCL cases, but with minimal or no apparent reduction in CSPα or synaptophysin in the neuropil. In contrast, terminal AD-ANCL patients exhibit significant reductions of presynaptic protein levels, including a significant reduction in CSPα and its main partner SNAP-25 but not in HSC70 levels. Our analysis of a single brain region in an early-stage AD-ANCL patient showed a non-significant trend toward synaptic loss (Fig. 5a). CSPα-deficient mice exhibit a massive neurodegeneration with wide heterogeneity in the time-course and type of neurons affected . Thus, it seems possible that this early-stage AD-ANCL patient might have synaptic losses that are not obvious in gross immunohistological analyses.
In summary, the widespread neurodegeneration seen in terminal AD-ANCL patients seems to be a consequence of both the early effects of mutant CSPα in the soma, most likely on lysosome function, and subsequent synaptic dysfunction resulting from the reduction in CSPα levels. We hypothesize that in this AD-ANCL patient the lysosomal dysfunction (ceroid accumulation) occurred before neuronal cell death and synaptic degeneration.
The authors especially want to thank the patients and their families, whose help and participation made this work possible. This work was funded in part by grants from the National Institutes of Health (NS043205 and NS084861 to MSS; P50 AG005681 and P01 AG003991 to JCM/NJC) and financial support from the Frye Family Foundation to MSS. This work was also supported by 2014 pilot funding from the Hope Center for Neurological Disorders and the Danforth Foundation Challenge at Washington University to BAB and CC. We thank Dr. Shonali Midha who provided editing and insightful discussion of the manuscript.
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