Nicotine promotes neuron survival and partially protects from Parkinson’s disease by suppressing SIRT6
Acta Neuropathologica Communications volume 6, Article number: 120 (2018)
Parkinson’s disease is characterized by progressive death of dopaminergic neurons, leading to motor and cognitive dysfunction. Epidemiological studies consistently show that the use of tobacco reduces the risk of Parkinson’s. We report that nicotine reduces the abundance of SIRT6 in neuronal culture and brain tissue. We find that reduction of SIRT6 is partly responsible for neuroprotection afforded by nicotine. Additionally, SIRT6 abundance is greater in Parkinson’s patient brains, and decreased in the brains of tobacco users. We also identify SNPs that promote SIRT6 expression and simultaneously associate with an increased risk of Parkinson’s. Furthermore, brain-specific SIRT6 knockout mice are protected from MPTP-induced Parkinson’s, while SIRT6 overexpressing mice develop more severe pathology. Our data suggest that SIRT6 plays a pathogenic and pro-inflammatory role in Parkinson’s and that nicotine can provide neuroprotection by accelerating its degradation. Inhibition of SIRT6 may be a promising strategy to ameliorate Parkinson’s and neurodegeneration.
Parkinson’s disease (PD) is an age-associated neurodegenerative disorder characterized by progressive death of dopaminergic (DA) neurons, leading to motor dysfunction, behavioral changes, and often dementia. No therapy exists to prevent neuronal death or halt advancement of PD . Several genetic risk factors have been identified in familial cases of Parkinson’s, such as mutations in α-Synuclein, LRRK2, and Parkin , however, it is still not clear what causes the death of DA neurons at advanced age in the majority of sporadic cases, which constitute over 93% of PD . Epidemiological studies have identified several factors that increase prevalence of PD, such as exposure to herbicides, certain dairy products , traumatic brain injury , or being overweight . Surprisingly, in 1959 a U.S. Government-sponsored study of health among 200,000 veterans reported that smoking reduced PD deaths by 64% . The negative association between tobacco use and PD and has been firmly established in over seventy independent studies [10, 15, 33, 34, 39, 57, 66]. Because tobacco smoke is a potent carcinogen, the “competing death risk” theory has been investigated and rejected . Some have also suggested a reverse causation explanation, where patients are more likely to quit smoking before PD development . However, the reduction of PD risk by tobacco is dependent on the duration and intensity of use , and second hand exposure in “never-smokers” is also protective , further supporting a causative link. Moreover, the tobacco component nicotine is believed to be a major mediator of neuroprotection . The mechanism of tobacco and nicotine’s protective actions on PD remain unclear, but researching this phenomenon presents an opportunity to identify new therapeutic targets.
SIRT6 is a member of the sirtuin family, which comprises NAD+-dependent enzymes that have emerged as targets of interest for age-associated disorders, including neurodegeneration . Both SIRT6 inhibitors [21, 42] and activators  are being developed to treat a variety of diseases, but SIRT6 has never been studied in the context of PD before. SIRT6 activity promotes apoptosis in numerous cell types , thus its activation is suggested to be beneficial for certain cancers . However, SIRT6 activity can also promote apoptosis in non-cancer cells, including neurons [9, 43]. In fact, SIRT6 inhibition was recently demonstrated to suppress stress-induced apoptosis [14, 51] and protect from retinal neurodegeneration . SIRT6 promotes production and secretion of inflammatory cytokines [4, 26, 27, 62], and chronic inflammation is thought to underlie neuronal death in PD and other neurodegenerative diseases. Tobacco smoke, a PD risk reducing factor, has been shown to decrease the abundance of SIRT6 in human lungs and in cell culture , while positive risk factors, such as paraquat and fatty acid overabundance both increase SIRT6 activity [18, 36]. These data suggest that SIRT6 might play a pathogenic role in PD, a topic that we investigate in this study.
SIRT6 overexpression is shown to extend longevity of mice , and ameliorate certain age-associated diseases in rodents [36, 50]. Based on this logic, SIRT6 is expected to protect against most age-associated diseases, including PD. However, rodents do not naturally develop PD, even at advanced age. Based on known SIRT6 functions, it is possible that SIRT6 activity has differential impact on human diseases of aging, which warrants detailed investigation of the relationship between SIRT6, neurodegeneration, and environmental risk factors for PD.
Materials and methods
In vitro cell culture experiments
Mouse embryonic fibroblasts were cultured in DMEM supplemented with 10% fetal bovine serum and penicillin/streptomycin antibiotics. The immortalized WT and SIRT6 null fibroblasts were previously generated in the laboratory of and are a generous gift from Dr. Raul Mostoslvasky.
Primary neuronal cultures
Primary neurons were isolated from P0 mouse pups by a standard protocol  modified for our study. Briefly, after dissection of neonatal brains, cortices were minced and digested in papain for 30 min at 30Co temperature. After that the solution was filtered through a 100 μm filter and then fractionated in a sucrose gradient. The gradient fractions containing neurons were collected and re-suspended in Neurobasal Media, and cells were counted and plated on poly-D-lysine coated plates. The neurons were cultured in Neurobasal Media with physiological concentrations of glucose (2.5 mM) at physiological concentrations of oxygen (5%) and supplemented with bFGF and B27. Cultures were treated and analyzed 7 days after plating. Histochemical analysis performed on every batch of cells confirmed that cells were comprised of 75% neurons and 25% astrocytes. Proportions were identified by flow cytometry with the markers- NeuN and GFAP respectively (Additional file 1: Figure S5). The neuron population included tyrosine hydroxylase expressing cells confirmed by SDS-PAGE analysis. Proportion of neural cell types were not changed between WT, SIRT6 KO, and OX cultures.
To prevent mycoplasma, bacterial and fungal contamination streptomycin, penicillin, and amphotericin b were used in manufacturer specified concentrations.
Flow cytometry & apoptosis analysis
Primary neurons or fibroblasts were collected from wells using Trypsin digestion. Cells were washed in PBS and then suspended in 100 μL of 1X binding buffer (10 mM HEPES, 140 mM NaCl, 2.5 mM CaCl2, pH 7.4) with 5 μL of Annexin-V conjugate and propidium iodide (apoptotic markers). After a 15-min incubation another 400 μL of binding buffer was added and then at least 10,000 cells were analyzed using a 3 laser/ 8 color Beckton-Dickinson LSR II. A cell was considered “alive” if it was negative for both Annexin-V and PI staining. In the case of NeuN and GFAP markers, primary cultures were permeabilized with triton to allow intracellular staining.
-(−) nicotine was used for all cell culture experiments (Sigma, Cat# N3876). Fresh dilutions were made for every experiment. Diluted in culture media.
((R)-MG132, Cayman, Cat# 13697–1). Diluted in DMSO.
AKT inhibitor was added 1 h before stress treatment at 1 μm concentration. Sellekchem, Cat # S1078. Diluted in DMSO.
Soluble TNF-RI recombinant human protein
Recombinant TNFα receptor inhibitor was added 1 h before stress treatment at 100 ng/mL. Life Technologies, Cat# PHR3015.
Cigarette smoke extract
Cigarette smoke was extracted by a custom vacuum device. Briefly, two 100 mm Marlboro cigarettes were burnt completely, and their smoke vacuum was collected and bubbled through 20 mL of Neurobasal Media for 1 min. This media was considered 100% cigarette smoke extract (CSE), which was later diluted and applied to cells at various concentrations.
Human GWAS meta-analysis
The ROS-MAP cohorts are community-based cohort studies of aging in which all participants are organ donors . We used 438 brains from subjects aged 67–108 years old with transcriptomic data including subjects with and without a variety of clinical diagnoses and phenotypes. Subjects were 2/3 female and predominantly Caucasian. Cohort characteristics can be found in the table below. In the original study, RNA was extracted from fresh frozen cortex sections and processed and analyzed using standard commercial RNA sequencing methods. RNA integrity was between 5.0 and 9.9, and postmortem intervals were 0–41 h. The dataset had already been assembled into RPKM values based on ENSEMBL gene ID. Data is available at https://www.synapse.org/#!Synapse:syn3219045.
Further normalization and quality control procedures were applied to each of the datasets. First, outlier values for each gene were removed (standard deviation > 4). There were several samples for which many genes were outliers (> 300). These samples were removed. Overall, these samples had lower than average RIN scores. After removing those samples, the remaining outlier values were imputed with a K-nearest neighbor algorithm40. To put the datasets on a comparable scale, we scaled the dataset by mean (0-normalized) and standard deviation (normalized so the standard deviation for each gene is 1).
For continuous variables in ROS-MAP such as PD symptoms, we used a linear regression model subtracting APOE ε4, age, sex, race, and population principle components, study number, RNA integrity, and batch. Logistic regression was used in the case of binary variables such as PD diagnosis.
Average post mortem interval
Past medical history of AD
Pathological diagnosis of AD
Past medical history of PD
Past medical history of Lewy body dementia
Self report history of thyroid problems
Self report history of heart problems
Self report history of stroke
Self report history of cancer
Self report history of hypertension
Human brain tissue analysis
Brain tissue specimens were acquired from participants in the Religious Orders Study and provided by the Rush Alzheimer’s Disease Center, Rush University Medical Center in Chicago. Samples were taken from the mid-temporal cortex for every specimen. Samples were homogenized and protein was isolated as described in SDS-PAGE, Western.
Brain tissue specimens were also obtained from the Human Brain and Spinal Fluid Resource Center, VA West Los Angeles Healthcare Center, Los Angeles, CA 90073 which is sponsored by the NINDS/NIMH, National Multiple Sclerosis Society, and Department of Veteran Affairs (in collaboration with the NIH NeuroBioBank). Tissue samples were taken from the frontal cortex (coronal slab #4) for every specimen. Samples were homogenized and protein was isolated as described in SDS-PAGE, Western.
Sodium-dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE, Western) immunoblots
Tissues or cells were lysed in RIPA buffer (50 mM Tris at pH 7.4, 150 mM NaCl, 1 M EDTA, 0.25% deoxy chloric acid, and 1% NP-40) supplemented with protease inhibitor cocktail (Roche, Cat# 4693116001) and phosphatase inhibitors (20 mM sodium fluoride, 1 mM sodium orthovanadate). The mixture was centrifuged, and supernatant was taken. Protein levels were standardized using a Bradford protein assay. Protein was mixed with sodium dodecyl sulfate and electrophoresed in a 13% or 12% acrylamide gels. Proteins were transferred to a PVDF membrane (0.45 μM) and the membrane was then immunoblotted with antibodies, diluted at concentrations recommend by the manufacturer, against the specific proteins being examined. In this study we used the following Antibodies: anti-SIRT1 (rabbit polyclonal, gift from Imai Shin ), anti-SIRT6 (rabbit polyclonal, Sigma-Aldrich, Cat# S4322), anti-SIRT6 (rabbit monoclonal, Cell Signaling Technology, Cat# 12486, used only for Fig. 2f), anti-AKT (rabbit monoclonal, Cell Signaling Technology, Cat# 4691), anti-pAKT-S473 (rabbit monoclonal, Cell Signaling Technology, Cat# 4060), anti-Tyrosine Hydroxalase (rabbit polyclonal, Abcam, Cat# ab112), anti-NeuN (rabbit monoclonal, Abcam, Cat# ab177487), anti-TNF alpha (rabbit polyclonal, Abcam, Cat# ab9739), anti-β-actin (mouse monoclonal, Abcam, Cat#ab8226), anti-GFAP (mouse monoclonal, ThermoFisher Scientific, Cat# 50–9892). Band intensities were quantified using ImageJ.
Commercial TNFα ELISA kits were used: Mouse TNFα DuoSet ELISA (R&D Systems, Cat# DY410). Media samples were analyzed in a Biotek Synergy 2 Multi-Mode Reader. Reads were normalized to cell number and amount of media present in the respective well.
Proteasome activity assay
Protocol was followed from Proteasome Activity Fluorometric Assay Kit (BioVision, Cat# K245–100). Primary neuronal cultures were treated with nicotine 90 min before assessment. Samples were analyzed in a Biotek Synergy 2 Multi-Mode Reader.
Real-time reverse polymerase chain reaction (RT-PCR)
Total RNA was extracted from tissues or cell culture using RNeasy kit (Qiagen, Cat# 74104). A cDNA library was prepared using Superscript III Synthesis System (Invitrogen, Cat# 18080051). Reverse polymerase reaction was performed using poly-dT primers as per manufacturers instruction. qRT-PCR was performed using CFX96 Touch™ Real-Time PCR Detection System, using the following primers: MAOB-F: ATGAGCAACAAAAGCCATGTCA; MAOB-R: TCCTAATTGTGTAAGTCCTGCCT; DAT1 F: AAATGCTCCGTGGGACCAATG; DAT1 R: GTCTCCCGCTCTTGAACCTC; VMAT2-F: AGGGGACACCTCTTACGACC; VMAT2-R: CTGCCACTTTCGGGAACACA; SIRT6-F: CTGAGAGACACCATTCTGGACT; SIRT6-R: GGTTGCAGGTTGACAATGACC; β-ACTIN-F: GACAGGATGCAGAAGGAGATCA; β-ACTIN-R: CTGATCCACATCTGCTGGAAGGT. All primers target mouse transcripts spanning exon junctions to eliminate DNA contribution to message quantification. All relative mRNA abundance measurements were to β-actin.
MAO-B activity was analyzed by the commercial MAO-Glo™ Assay, Promega, Cat# V1401. Briefly, brain cortex homogenates were made in 100 mM HEPES 5% gylcerol buffer pH ~ 7.4. Homogenates were treated per MAO-Glo protocol and were treated with clorgyline (MAOA inhibitor, Abcam, Cat# ab145646) and or deprenyl (MAOB inhibitor, Abcam, Cat# ab120604). Samples were analyzed in a Biotek Synergy 2 Multi-Mode Reader.
Animal experiments and transgenic mice
All procedures were performed according to guidelines and under supervision of the Institutional Animal Care and Use Committee (IACUC) of Cornell University. For all tests, we used both male and female 3-month-old mice. All transgenic animals were compared to corresponding wild-type littermates. Based on variability of prior collected data, necessary sample sizes were estimated using power analysis. No animals were excluded from the analysis; assignment to treatment groups was done at random using animal ear-tag numbers and done separately for males and females. All mice were handled daily for two weeks prior to the behavioral tests to eliminate the influence of stress and anxiety on their behavior due to human handling.
Conditional SIRT6 mice
The SIRT6 conditional deletion allele has been described previously . To obtain brain-specific SIRT6 knockout animals (BSKO), we crossed these mice, which have exons 2 and 3 of SIRT6 flanked by loxP sites (Additional file 1: Figure S2 A-D), to a nestin-cre line of mice (JAX Stock# 003771).
To create conditional SIRT6 overexpressing mice (BSOX), chicken actin promoter (CAG) was cloned in front of chloramphenicol acetyltransferase (CAT) gene, flanked by loxP cites. Mouse SIRT6 cDNA with added polyA signaling sequence was cloned in after the second loxP site. This construct normally expresses reporter gene – CAT, upon exposure to Cre-recombinase, the CAT gene would be excised and SIRT6 will be expressed (Additional file 1: Figure S2 A-D). Linearized construct was injected into mouse embryo pronucleus, after which embryos were transferred into pseudo-pregnant dames. Pups were screened for the transgene presence by PCR and backcrossed into C57/BL for 8 generations. To overexpress SIRT6 specifically in the brain, resulting transgenic mice were crossed to nestin-cre line of mice (JAX Stock# 003771).
RNA sequencing and overrepresentation analysis
RNA was purified from dissected cortices of 3-month-old male BSKO, and BSOX mice, as well as their corresponding WT littermates (2 WT vs 2 BSKO, 2 WT vs 2 BSOX). Total purified RNA was depleted of cytoplasmic and mitochondrial rRNA using beads conjugated to oligonucleotides with sequences complimentary to those of ribosomal RNA. Purified and riboRNA-depleted RNA was fragmented and assessed for its quality and fragment size. cDNA library synthesis and adaptor/bar code ligation was done using Illumina TruSeq RNA Library Prep Kit, according to manufacturer instructions. The library was sequenced on an Illumina HiSeq instrument employing the 100 bp single-ended run regime. This configuration routinely resulted in ~ 200 million reads per run. Obtained reads were mapped onto Mus musculus genome using the open source software programs – Bowtie2 and TopHat. Expression of various loci (both coding RNA, and short and intragenic long non-coding RNA) was assessed across different genotypes using a related open source software program – Cufflinks and the R statistical package. Significantly altered genes were determined by p-values equal to or less than 0.05 after correction for false discovery. For overrepresentation analysis, genes significantly altered in BSKO and BSOX mice were combined and run with the Panther Classification System (http://www.pantherdb.org/). Separate analysis was performed for: Pathways, Biological Process, Cellular Component, and Molecular Function (Additional files 2, 3 and 4). Mus musculus was used for the gene reference list, and Bonferroni correction for multiple testing was performed.
In vivo MPTP and nicotine mouse experiments: MPTP was delivered by intraperitoneal injection at 10 mg/kg four times a day for four days a week (two weeks’ total). Mice were scarified for immunohistochemistry 1 month after the completion of MPTP administration. Mice were 3 months of age at the start of treatment.
For in vivo administration, −(−) nicotine tartrate (MP Biomedicals, Cat# 0215355491) was added to tap water to create a concentration of free base nicotine at 200 μg per milliliter. Dilutions also contained 2% saccharin sodium salt hydrate (Oakwood Chemical, Cat# 098769). Control animals received only 2% saccharin. Nicotine dilutions were given in light protective bottles and made fresh 3 times a week. After 3 weeks of treatment mice were sacrificed and their tissues were analyzed. Mice were 3 months of age at the start of treatment.
MPTP & nicotine cotreatment
Mice received nicotine and MPTP as described above, nicotine was given throughout the trial starting two weeks prior to MPTP injections. Mice were scarified for immunohistochemistry 1 month after the completion of MPTP administration. Animals were 3 months of age at the start of the trial.
Behavior was measured in experimental animals two weeks after MPTP administration. In this period, animals were attended daily, to insure their wellbeing, as well as to habituate them to human handling to eliminate the influence of stress and anxiety on their behavior in the open field test paradigm. In this paradigm, a single animal was introduced to a novel square (90 cm by 90 cm), well-lit arena, cleaned of any familiar scents and filmed for 5 min. To take into consideration circadian changes in the behavior, all the experiments were performed at the same time of day, and no longer than 3 h in a row. Each mouse was recorded for at least five minutes. Mouse movement and statistics were analyzed automatically using custom-written tracking software, freely available upon request. At the time of data acquisition, identity of mouse genotype and treatment was not available to the person performing the analysis. Un-blinding was done only during statistical data analysis.
All mice were pre-trained on the rotarod apparatus to acclimate to the test. The pre-training consisted of four trials on 2 consecutive days, with an accelerating 4–40 rpm protocol reaching 40 rpm at 5 min. Latency to fall on the rotarod was recorded 1-week prior to sacrificing for immunohistochemistry (3-weeks after the start of MPTP regimen). Recording was done on two consecutive days with 3 trials for every mouse. The average of 6 trials for every mouse is presented.
Before brain sample collection, animals underwent cardiac perfusion with PBS for 5 min, and with 4% paraformaldehyde for 10 min. After perfusions, brain samples were quickly harvested and further fixed in 4% phosphate buffered paraformaldehyde solution for 16 h. After fixing, samples were cryo-protected in 30% sucrose for 30 h, embedded in OCT (Tissue-Tek) and stored at − 80 °C until use. Serial sections at 15 μm thickness were made on a cryostat and mounted on Superfrost Plus slides. Before staining, sections were dehydrated in acetone at 20 °C for 30 min, followed by three TBS washes before blocking in 1% normal goat serum for 2 h. Primary antibodies were diluted in TNT buffer (50 mM Tris at pH 7.5, 150 mM NaCl and 0.05% Tween 20; 1:500) and allowed for overnight incubation at 4 °C. Further staining steps were carried out with Vectastain Elite ABC HRP Kit (Vector Laboratories, now part of Maravai LifeSciences) according to the manufacturer’s instructions. Microscopic images were obtained using Aperio ScanScope SC2 system of total slide capture. Intensities of stain and cell counting were done using ImageJ software, macro functions were created for automatic quantification. Stereological assessment was also performed on tissue slides using Stereology Analyzer v 4.3.3 by ADCIS. A region of interest was outlined around the substantia nigra pars compacta on section slides, then a point grid was generated (100 × 100 pixels sampling and pattern, 1 pixel = 0.5 μm), if a grid point intersected a DA neuron it was counted, the volume fraction was subsequently computed. For each genotype/treatment, at least 5 sections from at least five mice were obtained and found to give a consistent pattern. Representative sections are shown in each case.
Experimental statistical analysis
For pairwise comparisons, relevant to data analysis a two-tailed Student’s t-test was used and is usually reported on figures using “*”-representations, where *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.001. T-test was calculated assuming “equal variance” if variance of compared samples was similar. In cases where several conditions are being tested, one-way ANOVA was used, and performance and results of such analysis is described in figure captions. In cases were serval variables are influencing the same measured values, such as genotype and stress influencing survival of cells; two-way ANOVA analysis was performed. In this case three p-values are reported in figure legends, such as p-value for the influence of genotype on survival, p-value for the influence of drug on the survival and interaction p-value. Where appropriate, further post-hoc statistical tests were performed. Calculations were preformed using licensed and registered copy of Microsoft Excel or the open source free statistical software R, with Bioconductor package. For genotype association studies, a combination of R and p-link software was used, to create a linear regression model, where statistics were corrected for individual APOE ε4 status, age, sex, race, population principle components, RNA integrity, and batch as covariates. Bonferroni correction was used to account for multiple testing.
Genetic variants and abundance of SIRT6 associate with TNFα and Parkinson’s disease in humans
To investigate the connection between SIRT6 and PD in humans, we performed a meta-analysis of published GWAS studies. First, we analyzed data from the Religious Orders Study (ROS)  and Rush Memory and Aging Project (MAP)  – ROS-MAP cohort, in which authors documented the medical history of participants, performed SNP genotyping, and measured genome-wide gene expression in the brain using RNA-sequencing. We analyzed thirteen SIRT6 SNPs reported in these studies and discovered that six SNPs, forming a linkage disequilibrium block in the N-terminus, have a significant impact (p < 10− 9) on the expression of SIRT6 (Fig. 1a-c). We tested the association of these SNPs with the incidence of PD and found that SNPs that associate with elevated expression of SIRT6 strongly associate with increased risk of PD (Fig. 1b, d). We verified that the identified SNPs associate with the risk of PD in five additional PD GWAS studies , which confirmed our original discovery. It is worth noting that the SNPs with the greatest impact on SIRT6 expression associate with PD incidence most strongly (Fig. 1d), suggesting a functional link. Moreover, reanalysis of published genome-wide expression data from the substantia nigra of healthy controls and patients with sporadic PD  revealed the latter tend to have elevated levels of SIRT6 transcripts (Fig. 1e).
Next, we acquired mid-cortex brain tissue samples from healthy controls, PD patients, and tobacco users . After measuring SIRT6 abundance in these samples, we observed that SIRT6 protein levels are elevated in PD patient brains. Additionally, there is a negative correlation of SIRT6 abundance with tobacco use (Fig. 1f, g, Additional file 1: Figure S1). Those who smoked more than three packs of cigarettes a day had the lowest SIRT6 levels. Furthermore, we found that regardless of smoking or disease status, SIRT6 positively and significantly correlates with the abundance of the pro-inflammatory cytokine tumor necrosis factor alpha (TNFα) (Fig.1h, i, Additional file 1: Figure S1). These data suggest that elevated SIRT6 levels might increases the risk PD, and that tobacco use can suppress SIRT6 in human brain tissue.
Tobacco and nicotine induce suppress SIRT6 in vitro and in vivo
Since both tobacco and SIRT6 expression are linked to PD, we tested if tobacco smoke influences SIRT6 abundance in neurons in vitro. To do so, we prepared cigarette smoke extract (Additional file 1: Figure S2) and treated primary murine neurons. We found that like in human smokers, the levels of SIRT6 can be decreased by tobacco in vitro (Fig. 2a). To test if nicotine itself reduces SIRT6 levels, we treated primary neurons with various doses of nicotine and found a dose-dependent decrease of SIRT6 abundance (Fig. 2b, c, Additional file 1: Figure S2C). The decrease of sirtuin levels by nicotine seems specific to SIRT6, as we observed no changes in the levels of the functionally similar SIRT1 (Fig. 2b). The reduction of SIRT6 in response to nicotine occurred rapidly, within 90 min of application, without changes in SIRT6 mRNA levels (Fig. 2f), all of which suggested a degradation mechanism. In support of this hypothesis, nicotine is known to regulate the ubiquitin-proteasome pathway in neurons , and SIRT6 has been shown to be regulated in a proteasome-dependent manner [31, 59]. To test this, we treated primary neurons with nicotine and the proteasome inhibitor MG132. We found that neurons with inhibited proteasome function do not decrease SIRT6 abundance in response to nicotine exposure (Fig. 2b, c, Additional file 1: Figure S2D). These data suggest that nicotine can accelerate proteasome-mediated degradation of SIRT6.
Next, we tested if nicotine in smoking-relevant concentrations can suppress SIRT6 abundance in vivo. To do so, we provided adult mice with drinking water supplemented with nicotine. We measured serum cotinine, an indicator of nicotine exposure, and found an average concentration of 26 ± 4 ng/mL in the nicotine-exposed mice (Fig. 2e), which is in the range of a typical human smoker . Brain lysate analysis revealed that mice exposed to nicotine had ~ 50% reduction of SIRT6 levels (Fig. 2d), supporting our in vitro data. Importantly, both nicotine exposure and SIRT6 inhibition are known to activate AKT by phosphorylation at S473 , and we observed this in vitro and in vivo (Fig. 2b, d), supporting validity of our experiments. Taken together, these data demonstrate that nicotine in smoking-relevant concentrations can induce SIRT6 degradation in brain tissue in vivo.
Loss of SIRT6 protects neurons from stress-induced apoptosis
To examine the causative relationship between SIRT6 and neuronal survival, we engineered brain-specific transgenic mice that either lack functional SIRT6 (BSKO, Fig. 3a), or overexpress SIRT6 by about four-fold (BSOX, Fig. 3b, c, Additional file 1: Figure S3A) specifically in the brain. Noteworthy, the magnitude of SIRT6 overexpression in the brains of BSOX mice is comparable to SIRT6 increase in humans with PD-associated SNPs (Additional file 1: Figure S3B). We isolated primary neurons from WT, BSKO, BSOX mice, and challenged them with a broad range of insults relevant to PD pathology. Following challenge, neurons were stained with the apoptotic markers Annexin-V and propidium iodide (PI), and their survival was measured using flow cytometry. Overall, SIRT6 KO neurons are better able to survive mitochondrial, oxidative, nutrient, and proteotoxic stress (Fig. 3d-f). Conversely, neurons that overexpress SIRT6 tend to have higher rates of apoptosis following these insults.
Nicotine is known to protect neurons from stress-induced apoptosis . Given our preliminary data (Fig. 2), we hypothesized that the neuroprotective effect of nicotine might depend on SIRT6. To test this, we exposed WT neurons, and those with knocked out (KO) or overexpressed (OX) SIRT6 to nicotine and MPP+ (1-methyl-4-phenylpyridinium) - a molecule used to model PD-associated neuron death . We found that after MPP+ challenge, nicotine improved survival of WT neurons; however, SIRT6 KO neurons did not receive protection from nicotine treatment (Fig. 3e). The neurons with enforced expression of SIRT6 had a marginal increase in survival after nicotine treatment (Fig. 3e), likely because nicotine-induced SIRT6 degradation was counteracted by the SIRT6 overexpressing transgene, dampening nicotine efficacy.
We repeated the experiments testing the impact of SIRT6 and nicotine on cellular stress resistance in independently derived WT and SIRT6 KO fibroblast cell lines. As before, we found that SIRT6 KO fibroblasts have superior stress tolerance (Fig. 4a, b), and that nicotine protects cells from apoptosis in part through SIRT6 (Fig. 4c, d), confirming our initial observations.
SIRT6 activity has been associated with cellular stress before, and it was reported that SIRT6 abundance increases in cells after stress . Our data is consistent with these reports. We find that after cellular stress, SIRT6 abundance is increased in both fibroblasts (Fig. 4e, f) and neurons (Fig. 4g, h). We also show that nicotine can reverse this stress-induced accumulation of SIRT6 and mitigate the downstream consequences (Fig. 4g, h, i, j), such as elevation of the pro-inflammatory cytokine TNFα. Taken together, these data demonstrate that the loss of SIRT6 enhances cellular survival under stress, and that nicotine at least partially functions through SIRT6 suppression to promote protection from apoptosis.
SIRT6 regulates the pro-apoptotic TNFα pathway and pro-survival AKT signaling in the brain
We next explored the impact of SIRT6 dosage on brain physiology by profiling cortical gene expression by RNA-sequencing in BSKO, BSOX, and their respective WT littermates. Subsequent overrepresentation analysis showed that groups of genes involved in dopamine signaling and nicotine pharmacodynamics were significantly altered (Fig. 5a, b). These unbiased associations further strengthened SIRT6-nicotine-cell death connection. Another category impacted by SIRT6 was “immune-related processes” (Additional file 2). This is intriguing, since neuroinflammation and cytokines, namely TNFα, have been implicated in PD [2, 65]. Moreover, in vitro experiments have shown that SIRT6 regulates the production  and secretion  of TNFα. To investigate this link further, we measured the secretion of TNFα from primary neurons isolated from BSKO, BSOX, or WT brains. We found that SIRT6 KO cultures secrete less TNFα into the media (Fig. 4j), while OX cells secrete more than cells derived from WT littermates (Additional file 1: Figure S4A). Moreover, we found that nicotine suppresses TNFα secretion in WT cultures but does not affect it in KO neurons (Fig. 4j), which is consistent with a SIRT6-mediated action of nicotine. We also measured levels of TNFα in vivo and found that SIRT6 deletion leads to decreased levels of total and cleaved TNFα (Fig. 5c, e, f). Interestingly, we did not observe an upregulation of full TNFα in naïve BSOX mice, but rather significantly increased cleaved form, indicating greater secretion dynamics. Supportive of the link between nicotine and SIRT6, we observed a significant drop of TNFα (full and cleaved forms) in brains of mice treated with nicotine (Fig. 2d).
In addition to inflammation, we investigated AKT signaling in the brains of SIRT6 transgenic animals. The PI3K-AKT axis is a canonical pro-growth and pro-survival pathway , often disrupted in the brains of PD patients [20, 60]. Suppression of SIRT6 has been shown to increase AKT expression and signaling [51, 55, 56]. We found that AKT phosphorylation is increased in the brains of BSKO mice and KO fibroblasts (Fig. 5c, d, Fig. 4b), and is lower in brains of BSOX mice. To assess if AKT and TNFα play a role in SIRT6 mediated neuronal survival, we inhibited AKT activity or the TNFα receptor in primary KO and OX cultures respectively. We found that AKT inhibition blunted the pro-survival phenotype in KO cultures, while TNFα inhibition rescued the pro-apoptotic phenotype in OX cultures under stress (Fig. 5g, h). Overall, these data demonstrate that SIRT6 upregulates the pro-apoptotic TNFα pathway and suppresses pro-survival AKT signaling, which supports a pathogenic role for SIRT6 in PD.
SIRT6 suppression confers neuroprotection in the MPTP model of Parkinson’s disease
To investigate the impact of SIRT6 on neurodegeneration in vivo, we utilized our brain-specific SIRT6 transgenic mice and the MPTP-based model of PD. MPTP (1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine) selectively induces death of DA neurons and produces pathologies that closely mimic human PD; these include: neuroinflammation, nigrostriatal damage, changes in behavior and physical activity . After BSKO, BSOX, and WT littermates were treated with MPTP, we assessed their behavior and activity using an open field test. Compared to WT littermates, BSKO animals were protected from physical activity decline (Fig. 6a-c) and anxiety increase (Fig. 6a, b) induced by MPTP. Subsequent immuno-histochemical analysis demonstrated that BSKO mice suffered less nigrostriatal damage: they had significantly more surviving DA neurons in the substantia nigra (Fig. 6d-e) and greater DA neuron dendrite density in the striatum relative to WT (Fig. 6f-g). Conversely, BSOX mice showed exaggerated PD-like symptoms– they had increased susceptibility to behavioral changes and elevated DA neuron death compared to WT littermates.
To examine the relationship between SIRT6, nicotine, and neuroprotection in vivo, we challenged WT and BSKO mice with MPTP, while simultaneously co-treating them with nicotine. WT mice treated with nicotine received partial protection from MPTP-induced DA neuron death, while BSKO mice did not benefit from nicotine (Fig. 7a, b). Additionally, we performed a motor assessment before sacrificing the mice (Additional file 1: Figure S5), which corroborates the partial protection afforded by nicotine. These data support our in vitro findings (Figs. 3d and 4c) and suggest that SIRT6 inhibition partially mediates nicotine’s neuroprotective action.
The neurotoxicity of MPTP depends on the activity of monoamine oxidase B (MAOB), vesicular monoamine transporter 2 (VMAT2), and the dopamine transporter 1 (DAT1) . We measured the expression of MAOB, VMAT2, and DAT1 and enzymatic activity of MAOB in the brains of BSKO, BSOX, and WT mice. We found that the DAT1/VMAT2 ratio and enzymatic activity of MAOB were unaltered by SIRT6 dosage (Fig. 7c, d). The expression of MAOB, VMAT2, and DAT1 were also not significantly different between WT and transgenic mice, corroborating the RNA-seq expression results (Additional file 1: Figure S3C-E, Additional files 3 and 4). These data suggest that BSKO animals resist MPTP-induced damage via enhanced DA neuron survival and not by alterations in MPTP metabolism.
Our study provides a new molecular link between nicotine, PD risk, and SIRT6. We suggest that SIRT6 is a plausible therapeutic target against PD. As far as we understand, genetic predisposition or cellular stresses that result in SIRT6 induction promote neuroinflammation and cell death (Fig. 7e), accelerating neurodegeneration. Nicotine or other molecules that can inhibit SIRT6 activity or prevent SIRT6 accumulation might enhance neuronal survival under stress (Fig. 3). We find that both SIRT6 isoforms are sensitive to nicotine and tobacco extract. In addition, it was previously found that the lower molecular weight isoform of SIRT6 is the predominate isoform in neuronal cultures , which we also typically observed. Our data demonstrates that nicotine can suppress SIRT6, likely through proteasome-mediated degradation, which is intriguing since nicotine has been shown to suppress proteasome activity . We postulate that nicotine can suppress overall proteasome activity (Additional file 1: Figure S2E) but simultaneously target and degrade certain proteins, such as SIRT6. The mechanism of this redirection is currently unknown and might be an interesting topic for future studies.
The pro-survival kinase AKT is reported to regulate SIRT6 degradation ; however, our experiments suggest an alternative mechanism, since we do not observe a correlation between AKT activity and the degree of SIRT6 reduction (Fig. 2b). Our data also support the conclusion that AKT signaling itself is regulated by SIRT6 activity.
It is fascinating that tobacco use reduces the prevalence of PD, while almost universally being detrimental to other diseases. Tobacco smoke consists of thousands of compounds, some of which might have very strong anti-PD properties. We and others suggest that nicotine is one of these molecules. Nicotine has been shown to have beneficial effects in animal models of PD and clinical trials have been encouraging, but more work is needed to determine the proper administration and efficacy [32, 48, 58]. Future studies might identify additional tobacco components that regulate sirtuins, neuronal survival, and neurodegeneration. These findings support the therapeutic potential of SIRT6 in PD.
In agreement with previous reports [26, 55, 62], we find that suppression of SIRT6 increases AKT signaling and reduces the secretion of TNFα, both of which likely mediate the impact of SIRT6 on DA neuron survival and PD pathology (Figs. 5g, h and 7e). Our data show that nicotine can reduce the abundance and secretion of TNFα in a SIRT6 dependent manner. SIRT6 levels also positively correlate with TNFα abundance in human brain tissue, further supporting an inflammatory and pathogenic role for SIRT6 in PD and corroborating a connection between SIRT6 and TNFα (Fig. 1h).
Previous studies have also demonstrated a pro-apoptotic role for neuronal SIRT6 in culture [9, 43], supporting our results. We find that four-fold overexpression of SIRT6 is sufficient to alter gene expression and enhance MPTP-induced pathology and neuron death in vivo (Fig. 6). Human SNPs that associate with a similar four-fold increase in SIRT6 expression significantly elevate PD risk (Fig. 1a-d). Additionally, brain tissue from PD patients have elevated levels of SIRT6 protein (Fig. 1f, g, Additional file 1: Figure S1), further supporting a PD-SIRT6 association.
Recent studies have reported that SIRT6 protects from DNA-damage associated with Alzheimer’s disease (AD) [28, 29]; more specifically, Kaluski et al. showed that cells without SIRT6 succumbed to apoptosis faster, following DNA-damage induced by ionizing radiation. We find SIRT6 KO cells (fibroblast lines and primary neurons) are more resistant to apoptosis induced by oxidative damage, proteotoxicity, and nutrient shortage, which is supported by other independent studies [51, 63, 67] and our previous work . It is possible that the effect of SIRT6 on stress-induced survival depends on the nature of the stress. It is also possible that there is a fundamental difference between AD and PD pathogenesis and stress, which lends SIRT6 as protective in one and pathogenic in the other. On this note, it is intriguing that DA neurons were shown to have extremely high levels of NAD+ , which could make these cells more sensitive to SIRT6 induced cell death.
Several studies propose that SIRT6 is an attractive target for activation, as it is shown to suppress survival of cancer cells [25, 59] and extend longevity in whole body overexpressing mice . Our data support the role of SIRT6 in the regulation of cell death, but add caution to potential therapies promoting its activity, because it may exacerbate death of DA neurons (among other cell types) and accelerate PD-associated degeneration. In the same regard, the implementation of inhibition therapies to promote cellular or neuronal survival must consider a potential carcinogenic pitfall. While there are many studies detailing the positive effects of sirtuin activity in aging and disease states, our data suggests that (at least for SIRT6) the outcome is context, cell-type, and disease dependent.
Finally, it should be noted that SIRT6 has at least three reported enzymatic activities: deacetylation , de-fatty acylation , and ADP-ribosylation . A compelling topic for future studies would be to investigate if any of these activities have a dominant impact on SIRT6’s role in neuronal and cellular survival, as well as to investigate the efficacy of transient SIRT6 suppression on PD (mimicking a clinical therapy). A detailed analysis of the relationship between SIRT6 and nicotine’s receptors and associated neuroprotective pathways should also be carried out  (Additional file 5). Such experiments will inform the development of activity-specific SIRT6 inhibitors that could be used for the treatment of PD.
The reduced prevalence of Parkinson’s disease in tobacco users is a fascinating phenomenon that is not understood. This study suggests a mechanistic explanation for how tobacco users are protected from Parkinson’s and how the tobacco component nicotine confers neuroprotection; more specifically, nicotine suppresses SIRT6 which confers resistance to neuron and cell death. Few effective treatments exist that prevent neuron death for those suffering from Parkinson’s and other neurodegenerative disorders. The identification of SIRT6 as potentially pathogenic and as a therapeutic target for suppression opens a novel line of research for the treatment of neurodegeneration.
Brain-specific SIRT6 knockout
Brain-specific SIRT6 overexpressing
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The authors would like to thank Jennifer Yordy and Kevin Klatt for critical discussions and corrections of the manuscript. SIRT6 brain-specific overexpression mice were constructed in Leonard Guarente’s Paul F. Glenn Laboratory at Massachusetts Institute of Technology. We would like to thank Dr. Raul Mostoslavsky for the gift of SIRT6 null cells, and discussions about the manuscript. We also thank NVIDIA Corporation for their donation of a Titan Xp GPU used in this work.
Conceptualization, JWN and SL; Formal Analysis, JWN, SL, and CG; Investigation, JWN, ABF, CAB, FJL, TY, JS and CG; Writing – Original Draft, JWN and SL; Writing – Review & Editing, JWN and SL; Supervision, SL; Funding Acquisition, JWN and SL. All authors read and approved the final manuscript.
S.L. and J.W.N. were in part supported by a grant from American Federation for Aging Research (AFAR, grant # 2015–030). S.L. received seed grant funding from the Cornell University Center for Vertebrate Genomics. J.W.N. was supported by a Glenn/AFAR Scholarship for Research in the Biology of Aging.
Availability of data and materials
All data generated during this study are included in this published article [and its supplementary information files].
Data (gene expression and SNP datasets) analyzed from the Rush Alzheimer’s Disease Center are available by request through: https://www.radc.rush.edu/home.htm and https://www.synapse.org/#!Synapse:syn3219045
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Human tissue and data collected from the Rush Alzheimer’s Disease Center was approved by by the Institutional Review Board of Rush University Medical Center.
Human tissue collected from the NIH NeuroBioBank was overseen by institutional review board PCC#: 2015–060672, VA Project #: 0002.
Animal experiments were done with approval from Cornell IACUC Protocol: 2013–0051 “Mouse model experiments to elucidate mechanisms of age-related diseases.”
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Figure S1. Human brain tissue analysis by SDS-PAGE. Figure S2. Cigarette smoke extract apparatus, nicotine blots, and proteasome activity. Figure S3. Transgenic mice and brain expression. Figure S4. SIRT6 OX neurons secrete more TNFα than WT. Figure S5. Primary neuronal culture composition. Figure S6. Nicotine does not rescue MPTP-induced rotarod motor performance in SIRT6 brain-specific knockout mice. (DOCX 2045 kb)
RNAseq overrepresentation analysis. (XLSX 32 kb)
RNAseq WT vs BSOX mice. (XLSX 2739 kb)
RNAseq WT vs BSKO mice. (XLSX 2649 kb)
nAChRs and SIRT6 interaction analysis. (XLSX 274 kb)
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Nicholatos, J.W., Francisco, A.B., Bender, C.A. et al. Nicotine promotes neuron survival and partially protects from Parkinson’s disease by suppressing SIRT6. acta neuropathol commun 6, 120 (2018). https://doi.org/10.1186/s40478-018-0625-y
- Parkinson’s disease
- Cell death