Rewiring neuronal microcircuits of the brain via spine head protrusions-a role for synaptopodin and intracellular calcium stores
- David Verbich†1,
- Denise Becker†2, 3, 5,
- Andreas Vlachos2, 6,
- Peter Mundel4,
- Thomas Deller2 and
- R. Anne McKinney1, 3Email author
© Verbich et al. 2016
Received: 7 April 2016
Accepted: 9 April 2016
Published: 22 April 2016
Neurological diseases associated with neuronal death are also accompanied by axonal denervation of connected brain regions. In these areas, denervation leads to a decrease in afferent drive, which may in turn trigger active central nervous system (CNS) circuitry rearrangement. This rewiring process is important therapeutically, since it can partially recover functions and can be further enhanced using modern rehabilitation strategies. Nevertheless, the cellular mechanisms of brain rewiring are not fully understood. We recently reported a mechanism by which neurons remodel their local connectivity under conditions of network-perturbance: hippocampal pyramidal cells can extend spine head protrusions (SHPs), which reach out toward neighboring terminals and form new synapses. Since this form of activity-dependent rewiring is observed only on some spines, we investigated the required conditions. We speculated, that the actin-associated protein synaptopodin, which is involved in several synaptic plasticity mechanisms, could play a role in the formation and/or stabilization of SHPs. Using hippocampal slice cultures, we found that ~70 % of spines with protrusions in CA1 pyramidal neurons contained synaptopodin. Analysis of synaptopodin-deficient neurons revealed that synaptopodin is required for the stability but not the formation of SHPs. The effects of synaptopodin could be linked to its role in Ca2+ homeostasis, since spines with protrusions often contained ryanodine receptors and synaptopodin. Furthermore, disrupting Ca2+ signaling shortened protrusion lifetime. By transgenically reintroducing synaptopodin on a synaptopodin-deficient background, SHP stability could be rescued. Overall, we show that synaptopodin increases the stability of SHPs, and could potentially modulate the rewiring of microcircuitries by making synaptic reorganization more efficient.
Functional and structural deficits associated with neurological diseases can be consequences of disruptions in the neuronal microcircuitry [1, 2]. Following axonal denervation, the affected network responds to the changes in synaptic transmission and perhaps other resulting injuries with profound reorganization [2–7]. In connected and denervated regions reactive synaptogenesis and collateral sprouting occurs, which can, in part, reestablish the balance of excitation and inhibition and the flow of information [2, 5, 7, 8]. In non-denervated regions, changes in network activity may result in the rewiring of the existing circuitry, which allows the brain to reroute information through neighboring areas, thereby bypassing the damaged region [8–10]. This post-lesional rewiring of intact circuits is important therapeutically, since it can partially recover functions [11, 12] and can be further enhanced using novel therapeutic [7, 8, 13–15] or modern rehabilitation strategies [16–18].
The cellular mechanisms for structural microcircuit reorganization are not yet fully understood, but local synaptic rewiring is a clear outcome. In particular dendritic spines appear to be capable of rewiring neurons, since they exhibit a considerable structural plasticity in response to external cues, such as glutamate, that allows them to remodel their geometry and connectivity [19–23]. We have investigated the role of spines in the rewiring of microcircuits in previous studies and have reported that a subset of innervated spines is able to form spine head protrusions (SHPs), which can form new synapses with neighboring but not yet connected boutons [24, 25]. This phenomenon became much more frequent after exposure of the neurons to the action potential blocker tetrodotoxin (TTX), demonstrating that perturbations in network activity can enhance this mechanism of microcircuit reorganization. Indeed, glutamate release from neighboring axon terminals appears to regulate SHP formation and stabilization . Once formed, SHPs grow towards active glutamate sources, suggesting that they are part of a mechanism that allows modifications of an established microcircuit in an activity-dependent manner [24, 25].
Since the cellular and molecular mechanisms involved in SHP formation and stabilization are possible targets to enhance and support the rewiring of networks, we searched for candidate regulatory molecules. Synaptopodin appeared to be a promising candidate regulatory molecule in this regard, since it is an actin-associated protein  found in a subpopulation of mature spines [27, 28], and is involved in both functional and structural synaptic plasticity [29–31]. Moreover, it is an essential component of the spine apparatus organelle [28, 32, 33], a local Ca2+ store of spines [29, 34, 35]. Using live-imaging and transgenic approaches, we investigated whether synaptopodin is involved in SHP formation and stabilization. Although synaptopodin-loss does not affect the formation of SHPs, synaptopodin-loss leads to SHPs that are transient and unstable. Together with pharmacological experiments, we suggest that Ca2+ release from synaptopodin-associated stores is required for the stability of SHPs.
Materials and methods
Organotypic hippocampal slice cultures were prepared at P3-8 from mice (see below for strains) of both sexes using either the roller-tube method  or the interface method , as described previously. See Additional file 1: SI Materials and Methods for further details. All experimental manipulations were carried out after 3 weeks in vitro to ensure the reestablishment and stabilization of synaptic structures and functions in the organotypic slice cultures.
L15  GFP expressing mice were used as wild type, SP-KO  and SP-KO mice expressing GFP-tagged synaptopodin  were previously described. See Additional file 1: SI Materials and Methods for further details.
Immunostaining and static imaging
Slice cultures were immunostained as described previously .
Time-lapse confocal imaging
3D Image reconstruction and analysis
Image stacks were deconvolved using Huygens Essential software (Scientific Volume Imaging, Hilversum, The Netherlands) with a full maximum likelihood extrapolation algorithm. Volume rendering and quantification were carried out using Imaris ×64 software (Bitplane AG, Zurich, Switzerland). No filtering or resampling was performed. SHPs were quantified by finding pointy structures emerging from spine heads that were ≥0.5 μm in length. To calculate SHP lifetime, every SHP that appeared de novo on a spine was counted and if SHPs appeared in only one time frame, then it was assumed that these SHPs had lifetimes corresponding to the interval between z stacks (2 or 5 min). Because stack acquisition took ~30 s (usually 24 stacks for 60 min imaging experiment, with a time interval of 2 min), the theoretical maximum lifetime is 48 min (48 min of imaging, not counting the 12 min of image acquisition). See Additional file 1: SI Materials and Methods for further details.
Whole-cell voltage clamp recordings were obtained from CA1 pyramidal neurons in either wild type or SP-KO slices held at − 60 mV with an Axopatch 200A amplifier (Molecular Devices), as previously described . See Additional file 1: SI Materials and Methods for further details.
All values are given as the mean ± SEM. Normality of data distribution was determined with Kolmogrov-Smirnov test. Statistical comparisons were made with two-tailed, two sample or paired t tests or one-way ANOVA with Dunnett’s test to compare multiple treatments to a treatment of interest where appropriate, and Mann-Whitney tests were used for non-parametric testing where appropriate and P < 0.05 considered as significant for all statistical comparisons.
Spines that form SHPs regularly contain synaptopodin
SP-KO slice cultures have similar morphological and physiological properties as wild type slice cultures
To provide further evidence for a link between synaptopodin and SHPs, we analyzed the morphological and physiological properties of CA1 neurons in synaptopodin-deficient (SP-KO) mice. Analysis of these mice previously revealed that synaptopodin is not involved in the regulation of spine number , but rather in the regulation of spine head growth under conditions of plasticity . Since these data point to an involvement of synaptopodin in structural spine remodeling and synaptic plasticity, we wondered whether spines of CA1 neurons of SP-KO might differ in their ability to form SHPs from spines of wild type animals. To obtain a baseline for these experiments, we crossbred SP-KO mice with a mouse line expressing mGFP in neurons  and studied the morphological and functional properties of mGFP-positive CA1 neurons in wild type and SP-deficient cultures.
Consistent with a previous in vivo report , mGFP-positive CA1 pyramidal cells in organotypic slice cultures had a similar morphology in both wild type and SP-KO slices and synaptopodin deletion did not affect mean spine density (wild type, 1.71 ± 0.08 spines per μm of dendrite; SP-KO, 1.74 ± 0.06 spines per μm of dendrite), mean spine length (wild type, 1.35 ± 0.03 μm; SP-KO, 1.39 ± 0.03 μm) or mean spine volume (wild type, 0.54 ± 0.01 μm3; SP-KO, 0.54 ± 0.01 μm3) (Additional file 2: Figure S1a-c). We then recorded mEPSCs to ensure that if we observed any differences in SHPs between SP-KO and their controls (Additional file 2: Figure S1d), these could not be explained by changes in excitatory neurotransmission. We found that the average amplitude (Additional file 2: Figure S1e, f left), inter-mEPSC interval (Additional file 2: Figure S1e, f right) and decay time (wild type, 2.57 ± 0.08 ms; SP-KO, 2.77 ± 0.16 ms) of mEPSCs were comparable in wild type and SP-KO slices. Further, in SP-KO hippocampus, afferent inputs to CA1 are comparable between SP-KO and wild type mice [30, 32]. Thus, we find that culturing slices from SP-KO mice crossed with mice expressing mGFP does not change basal morphological properties or excitatory neurotransmission onto CA1 pyramidal cells.
SHPs have shortened lifetimes in SP-KO hippocampal slices
Based on our immunostaining finding that only few spines without synaptopodin formed SHPs, we reasoned that SP-KO slices would form few SHPs. Surprisingly, we found that SHPs formed in SP-KO slices as they did in controls, but these SHPs were unstable and their lifetimes were considerably shorter (Fig. 2a-c). On average, SHPs formed in SP-KO slices had a mean lifetime of 7.15 ± 1.48 min (from both control and TTX-treated slices) that was significantly shorter than mean wild type lifetime of 16.32 ± 3.40 min (Fig. 2c, d). In SP-KO slices exposed to control medium, 0.07 ± 0.07 SHPs per 10 μm of dendrite were found after 1 h (Fig. 2a, b). The addition of TTX to the medium increased SHP formation initially, but most SHPs retracted within 10–15 min of their formation so that the number of SHPs after 1 h was not significantly different from SP-KO and wild type slices treated with control solution (0.24 ± 0.13 SHPs per 10 μm of dendrite; Fig. 2a, b). Moreover, analyzing the distribution of SHP lifetimes clearly shows that SP-KO SHPs have shortened lifetimes (Fig. 2d, e). Thus, SHP kinetics on SP-KO neurons are different from the majority of SHPs found in wild type slices. In summary, although SHPs can form on SP-KO spines, these SHPs are unstable and retract quickly.
Ca2+ release from ryanodine-sensitive stores increases SHP lifetime
After demonstrating the link between synaptopodin and the stability of SHPs, we wondered how synaptopodin could exert its effect. In previous work, we have shown that synaptopodin is an essential component of the spine apparatus , a specialized form of smooth endoplasmic reticulum (ER) that is in contact with both the dendritic ER as well as the postsynaptic density . The spine apparatus has been suggested to function as a local Ca2+ store that could regulate actin-based spine motility by releasing or sequestering Ca2+ from/into the smooth ER [29, 34, 35, 44]. This Ca2+ release likely occurs through ryanodine-sensitive receptors found throughout dendritic and spine ER . Since the lifetime of SHPs is shorter on spines without synaptopodin and since synaptopodin is required for the formation of the spine apparatus, we wondered if local Ca2+ stores are important for SHP stability.
To test if Ca2+ dynamics can stabilize SHPs, we pharmacologically altered Ca2+ homeostasis in hippocampal slices and combined this with time-lapse imaging of SHPs. First, we blocked Ca2+ release from ryanodine-sensitive stores with a high concentration of ryanodine (Ry, 80-100 μM) [39, 46]. In wild type slices, ryanodine significantly reduced the lifetime of SHPs (both from ryanodine treatment alone and ryanodine with TTX) compared to SHPs from wild type slices without ryanodine treatment (Fig. 3b). Second, we used cyclopiazonic acid (CPA, 25 μM), a sarco/endoplasmic reticulum Ca2+-ATPase inhibitor to deplete Ca2+ stores and inhibit Ca2+ release . We found that in wild type slices, either treatment with CPA alone or CPA together with TTX reduced mean SHP lifetime compared to slices exposed to control or TTX-containing medium (Fig. 3b). Finally, to directly test whether intracellular Ca2+ is important for SHP stability, we patched individual CA1 pyramidal neurons and filled them with 100-150 μM Alexa Fluor 488 (AF 488, for morphological labeling) and included the Ca2+ chelator BAPTA (20 mM) to sequester Ca2+. Appropriate control experiments were performed to ensure that we would still be able to observe SHPs after patching and dye-filling neurons. We found that in wild type slices, CA1 neurons filled with AF 488 (without BAPTA) and exposed to TTX still formed SHPs (0.80 ± 0.02 SHPs per 10 μm of dendrite after 1 h of TTX; n = 3 slices, 62 μm of dendrite) that were stable and comparable to SHPs observed on mGFP-labeled neurons (mean lifetime, 17.63 ± 4.46 min, n = 16 SHPs from 8 slices from control and TTX experiments, P > 0.05 compared to wild type SHPs from mGFP neurons). After including BAPTA in the patch pipette, mean SHP lifetime decreased significantly to 7.26 ± 1.17 min (Fig. 3b). Moreover, the lifetime of SHPs from ryanodine, CPA or BAPTA-treated wild type slices phenocopied the lifetime of SHPs observed in SP-KO mice and their distributions were leftward-shifted compared to those from untreated wild type slices (Fig. 3c, e). Taken together, our results from wild type cultures show that internal Ca2+ signaling from ryanodine-sensitive stores is important for the stability of SHPs.
Next, we studied how these treatments would affect SHPs in SP-KO mice. Since these mice do not have spine apparatuses  – putative specialized Ca2+ stores [29, 34, 35] – we predicted that pharmacologically perturbing the internal Ca2+ concentration should have little or no effect on SHP lifetimes in these mice. Indeed, treating SP-KO hippocampal slice cultures with either ryanodine alone or ryanodine with TTX did not significantly change the mean lifetime of SHPs compared to SHPs found in SP-KO slices treated with control or TTX solution (Fig. 3d). CPA treatment alone or CPA with TTX did not significantly alter mean SHP lifetime (Fig. 3d). In addition, including BAPTA in the patch pipette had no effect on mean SHP lifetime compared to the mean lifetime of SHPs on neurons patched with only adding AF 488 to the internal solution in SP-KO slices (Fig. 3d). The distributions of SHP lifetimes after the different Ca2+ pharmacological treatments were similar to SHP lifetimes in SP-KO slices without treatment (Fig. 3e). Thus, inhibition of intracellular Ca2+ stores and the lack of synaptopodin were not additive in their effects on SHP stability. Therefore, we propose that Ca2+ signaling from ryanodine-sensitive stores, for example the spine apparatus, stabilizes SHPs.
Reintroducing synaptopodin stabilizes and prolongs the lifetime of SHPs
To provide further evidence for the role of synaptopodin in the stabilization of SHPs, we studied spine dynamics in slice cultures prepared from mice expressing GFP-tagged synaptopodin on a SP-KO background. These mice were created by crossing a transgenic mouse line expressing GFP-labeled synaptopodin under the Thy1.2 promoter with the SP-KO mouse line (Thy1-GFP/SP x SP-KO mice) . In these mice effects of SP-deficiency were rescued, specifically the spine apparatus was re-established in organotypic slice cultures generated from brain of these mice .
In order to distinguish between synaptopodin-positive and synaptopodin-negative spines in GFP/SP slices, we also imaged GFP-labeled synaptopodin prior to (Fig. 4d, Pre) and after (Fig. 4d, Post) time-lapse imaging. We found that while synaptopodin-negative spines from both GFP/SP and SP-KO slices formed protrusions with a mean lifetime of 9.04 ± 1.64 min, synaptopodin-positive spines formed protrusions lasting an average of 26.75 ± 5.61 min, significantly longer compared to synaptopodin-negative spines (Fig. 4e). Moreover, the distribution of SHP lifetimes was again shifted to the right (Fig. 4f), showing that synaptopodin-positive spines formed longer-lasting SHPs. Taken together, our results indicate that synaptopodin stabilizes dendritic SHPs.
The ability of the brain to rewire its microcircuit is a naturally occurring repair mechanism, which allows the CNS to ameliorate or even compensate functional deficits caused by brain lesions of any kind [2, 5, 12, 48]. However, there is still a need to understand the cellular and molecular basis of this phenomenon to optimize and time treatment strategies  and/or to find new targets for intervention. In the present study, we have focused on one of the mechanisms implicated in network rewiring, i.e., the formation of SHPs under conditions of network perturbance [24, 25]. We have focused on the regulatory role of the actin-modulating protein synaptopodin, which is involved in functional and structural plasticity of cortical synapses [29, 39, 50, 51]. We found that: (i) synaptopodin is associated with spines forming SHPs; (ii) spines from SP-KO hippocampus formed SHPs that were unstable; (iii) disrupting Ca2+ release from intracellular stores shortened protrusion lifetime and mimicked the SP-KO phenotype; and (iv) SHPs formed on spines with synaptopodin are longer lasting compared to synaptopodin-negative spines. We conclude that the presence of synaptopodin in a spine increases SHP stability, likely through Ca2+ release from local ryanodine-sensitive Ca2+ stores. The potential for rewiring within the local microcircuitry may thus be higher in spines containing synaptopodin.
The stability of spines depends on synaptopodin, the spine apparatus and spine calcium stores
The role of synaptopodin in the CNS has been investigated during the last decade and it has been shown to play a role in different forms of plasticity at hippocampal synapses [30, 32, 39, 42, 52, 53]. At the mechanistic level, many of these biological functions are linked to the spine apparatus organelle [43, 54], which is found in some but not all spines and which is an efficient spine calcium store [29, 34, 35, 42]. Synaptopodin is an essential component of this organelle  and mice lacking synaptopodin exhibit single tubules of smooth ER but not its stacked and densely packed version, i.e. the “spine apparatus” . Using these mice and pharmacology, we have studied the role of calcium stores in the formation and stabilization of SHPs. Both approaches revealed that the formation of SHPs does not depend on the presence of calcium stores in spines, since SHPs formed under conditions of pharmacological calcium depletion as well as in SP-KO mice. Their stability, however, was clearly affected since the lifetime of SHPs was considerably shortened under these conditions. Of note, pharmacological calcium store depletion did not have any additive effect on the lifetime of SHPs in SP-KO mice, suggesting that spine-apparatus associated ryanodine-sensitive calcium stores indeed regulate their stability.
What could be the link between the presence of a spine apparatus and SHP stability? We previously showed that SHP formation partially depends on NMDA receptor activation , and because NMDA receptors can be activated by single quanta of glutamate in an AMPA receptor-dependent manner , we propose that Ca2+ entering through NMDA receptors may trigger Ca2+-induced Ca2+-release important for SHP stability. Since Ca2+ signaling over the time frame of seconds activates Rho GTPases which, in turn, results in spine shape changes lasting tens of minutes [56, 57], the lack of Ca2+ signaling in synaptopodin-negative spines may fail to activate Rho GTPases  and, thus, SHPs would not be maintained. Although this hypothesis appears to be straightforward, other contributors to internal Ca2+ dynamics, namely Ca2+ from IP3-sensitive stores released through metabotropic glutamate receptor (mGluR) activation could also be involved. Indeed, while spines with ER can undergo mGluR-dependent depression, neighboring spines without ER cannot . Again, Ca2+ release from these stores, many of which are synaptopodin-positive, were responsible for triggering depression . Direct measurements of calcium in spines with and without SHPs will be needed to shed more light on the precise role of calcium stores in the context of SHP stabilization.
Synaptopodin may regulate SHPs via actin reorganization
Synaptopodin is an actin-binding protein  and given that spine motility is driven by actin dynamics [22, 59], synaptopodin itself or through its interaction (s) with other actin-binding proteins may act to stabilize actin filaments within SHPs. In fact, synaptopodin binds to α-actinin [60, 61] that crosslinks and bundles actin . By protecting actin filaments from disassembly, synaptopodin is also important for the sustained enlargement of dendritic spines during LTP [30, 31]. Thus, another possible pathway through which synaptopodin influences SHP stability could be via the regulation of actin remodeling.
Synaptopodin and network rewiring
In our initial description of SHPs, we found that SHPs formed within ~10 min of iontophoretic glutamate application in a directional manner, suggesting that glutamate triggers a reaction within spines to form protrusions [24, 25]. Moreover, after triggering SHPs, we found that a subsequent glutamate application within 20 min of their formation could destabilize them. Thus, we proposed that SHPs rapidly mature over ~10 min of their initial formation [24, 25]. Our present findings support the idea of an initial phase of formation and a later phase of SHP stabilization. Spines lacking synaptopodin or spines in SP-KO animals formed SHPs that retracted within ~10 min of forming. In contrast, spines containing synaptopodin were maintained for longer time periods (>15 min). These observations, together with our pharmacological data imply that synaptopodin and/or the spine apparatus could be part of the cellular machinery required for SHP stabilization. The presence of synaptopodin/spine apparatus, by stabilizing SHPs, may lengthen the associations of SHPs with new, local presynaptic partners and allow these spines to persist for long periods. Accordingly, these spines may be more resistant to elimination during sensory deprivation [63, 64] or denervation [65, 66]. The presence of synaptopodin in a spine may thus play a critical role in brain rewiring under pathological conditions, since it will determine whether a specific spine will or will not form a new synapse during microcircuit rewiring.
Implications for brain repair
The rewiring of neuronal networks is an important endogenous repair mechanism following neuronal damage [1, 2, 5]. Furthermore, it can be enhanced using modern rehabilitation strategies [11, 12]. As such, it warrants further investigation since strategies aimed at optimizing neuronal rewiring postlesion are undoubtedly called for. In our in vitro approach, we have modeled changes in network activity using TTX-treatment. This experimental setting allowed us to study rewiring caused by a decrease in network activity, which occurs at different levels of a network following brain damage. Using this approach, we identified synaptopodin as a molecule involved in microcircuit rewiring via SHPs.
Other aspects important for brain repair, e.g. changes at the injury site, transneuronal changes in areas of denervation [1, 2], etc., were not investigated, although they all play a role in a clinical setting. Similarly, we did not investigate posttraumatic epilepsy, a condition observed in a significant percentage of patients with brain trauma [67, 68], which may also affect rewiring. In fact, we consider the absence of such factors advantageous for unraveling cell biological mechanisms involved in brain reorganization, since too many variables, such as inflammatory signaling molecules released at an injury site (e.g., Loane and Kumar, 2016) , can make data interpretation very difficult. After the identification of candidate regulatory molecules, however, more complex in vivo lesioning models will be needed to demonstrate the in vivo relevance of our findings in the context of brain injury.
We have studied the reorganization of brain microcircuits in vitro. Our data show that under conditions of network-perturbance (TTX-treatment) hippocampal pyramidal cells extend SHPs, which reach out toward neighboring terminals to form new synapses. Spines forming SHP exhibited more stable protrusions if the spine also contained synaptopodin. Thus, the presence of synaptopodin influences the rewiring of neuronal microcircuitries and makes the rewiring more efficient. Further studies using lesion models are now needed to show that this mechanism is relevant under in vivo conditions.
We thank F. Charron, C. Nolte-Uhl, M. Lenz and N. Zahn for assistance with cultures, R. Gill for assistance with imaging, P. Chang for imaging assistance and critical reading and editing of this manuscript, P. Caroni for L15 mice. D.V. received a CIHR Doctoral Award and a Michael Smith Foreign Study Supplement to conduct the rescue experiments at Goethe-University, Frankfurt. D.B. received a DAAD scholarship for her work at McGill University, Montreal. This study was supported by CIHR (MOP 86724 to R.A.M.) and the Deutsche Forschungsgemeinschaft (DFG DE 10-1 to T.D. and CRC 1080 B3 to A.V. and T.D.).
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