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Table 1 Parameters and procedures applied to estimate the volume of brain subdivisions and number of neurons

From: Stereological study of the neuronal number and volume of 38 brain subdivisions of subjects diagnosed with autism reveals significant alterations restricted to the striatum, amygdala and cerebellum

Structures and their subdivisions

Number of sections examined (per case)

Obj. (Vol.)

Obj. (Numb.)

Grid size (μm) for fractionator

Test area frame × height (μm)

Number of counting spaces (per case)

Number of neurons counted (per case)

CE*

Amygdala (four nuclei)

12

1.25x

40x

1000 × 1000

80 × 80 × 10

356

454

0.01

Thalamus

6

1.25x

40x

1000 × 1000

80 × 80 × 10

188

313

0.01

Entorhinal c.

        

LII

6

2.5x

40x

400 × 400

60 × 60 × 30

113

164

0.003

LIII

6

2.5x

40x

800 × 800

60 × 60 × 30

118

277

 

LV

6

2.5x

40x

600 × 600

60 × 60 × 30

62

161

 

LVI

6

2.5x

40x

800 × 800

60 × 60 × 30

68

184

 

CA1

14

2.5x

40x

1000 × 1000

60 × 60 × 30

207

543

0.003

CA2

14

2.5x

40x

400 × 400

60 × 60 × 30

121

337

 

CA3

14

2.5x

40x

400 × 400

60 × 60 × 30

144

330

 

CA4

14

2.5x

40x

600 × 600

100 × 100 × 30

130

429

 

Caudate nucleus

9

2.5x

40x

1400 × 1400

60 × 60 × 30

270

751

0.04

Putamen

9

2.5x

40x

1400 × 1400

60 × 60 × 30

309

844

Globus pallidus

6

2.5x

40x

300 × 300

80 × 80 × 30

1953

505

Nucleus accumbens

6

2.5x

40x

700 × 700

60 × 60 × 30

202

749

Magnocellular LGB

4

5x

40x

500 × 500

100 × 100 × 30

96

230

0.002

Parvocellular LGB

4

5x

40x

500 × 500

100 × 100 × 30

134

1,418

0.002

Claustrum

13

1.25x

40x

250 × 250

60 × 60 × 10

274

318

0.01

Substantia nigra

10

2.5x

40x

500 × 500

80 × 80 × 30

366

493

0.002

Magnocellular basal complex (Ch1-Ch4)

16

2.5x

40x

500 × 500

80 × 80 × 30

323

507

0.005

Dentate nucleus

11

2.5x

40x

1000 × 1000

180 × 180 × 30

335

792

0.002

Inferior olive

8

2.5x

40x

1000 × 1000

180 × 180 × 30

213

364

0.002

Cerebellum

8

1.25x

20x

1800 × 1800

180 × 180 × 30

1419

773

0.05

  1. Number of sections examined = mean number of equidistant sections examined per structure/case.
  2. Obj. (Vol.) = Objective lens (1.25x, 2.5x, or 5x) used to provide final magnification for planimetry and volumetry.
  3. Obj. (Numb.) = Objective lens (40x or 20x) used for fractionator to estimate neuronal density and total number of neurons.
  4. *CE = the average predicted Coefficient of Error of the neuronal counts (Scheaffer).