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Table 3 Gene Ontology (GO) and analysis of Biological Processes (BP) in which specific genes are involved

From: Chemogenetic modulation of sensory neurons reveals their regulating role in melanoma progression

Up-regulated genes in alive × dead

Functional category

Genes in list

Total genes

FDR

Genes

Nervous system development

22

2474

0.004805005

ARX HAPLN2 SLITRK5 VCX3A VCX ZNF365 NRTN TFAP2B NGFR MYB GFAP LRRTM2 LHFPL4 DPYSL5 FABP7 FOXG1 VIT MPZ CA10 KCNQ2 ACHE HPCAL4

Central nervous system development

12

1054

0.029644095

HAPLN2 VCX3A VCX ARX GFAP ZNF365 FABP7 SLITRK5 FOXG1 VIT CA10 HPCAL4

Regulation of hormone levels

9

583

0.029644095

ACHE PCSK1N MYB VGF RDH5 BCO1 TFAP2B KCNJ11 MYRIP

Down-regulated genes in alive × dead

Functional category

Genes in list

Total genes

FDR

Genes

Cornification

17

125

8.55E−15

TMEM79 TGM1 KRT37 PI3 KRT17 KLK14 TCHH KRT82 SPRR2D KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81 SPRR2A

Epithelium development

42

1386

9.40E−15

KLK14 SPRR2D OVOL1 NRARP SPRR2A HGF TGM1 BMP4 FGF7 AJAP1 WNT11 CNFN DLX5 ALOX12 SDC1 ID3 TBX4 KRT17 GREB1L ADAMTSL4 RSPO3 TCHH ELF3 TMEM79 HEYL GREM1 ROR2 SIX2 SOX11 KRT25 SULT2B1 TBX1 RHCG KRT37 PI3 KRT82 KLK13 KRT80 JUP KLK12 SPINK9 KRT81

Epithelial cell differentiation

33

831

1.67E−14

SPRR2D OVOL1 SPRR2A TGM1 BMP4 AJAP1 CNFN DLX5 SDC1 ID3 KRT17 ADAMTSL4 TCHH ELF3 TMEM79 GREM1 SIX2 SOX11 WNT11 SULT2B1 TBX1 RHCG KRT37 PI3 KLK14 KRT82 KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81

Tissue development

51

2168

2.40E−14

KLK14 SPRR2D OVOL1 NRARP SPRR2A HGF TGM1 ZBTB16 BMP4 FGF7 AJAP1 PITX1 WNT11 SMPD3 CNFN DLX5 ALOX12 SDC1 ID3 TBX4 KRT17 GREB1L ADAMTSL4 RSPO3 FGF18 TCHH PKDCC ELF3 TMEM79 HEYL GREM1 ROR2 ADRB2 SIX2 SOX11 KRT25 COL8A1 SULT2B1 SIK1 ACTG2 TBX1 RHCG KRT37 PI3 KRT82 KLK13 KRT80 JUP KLK12 SPINK9 KRT81

Skin development

23

464

1.11E−11

SPRR2D SPRR2A TGM1 CNFN ALOX12 KRT17 FGF7 TCHH TMEM79 OVOL1 JUP ALOX12B KRT25 CLDN4 KRT37 PI3 KLK14 KRT82 KLK13 KRT80 KLK12 SPINK9 KRT81

Keratinization

18

268

4.20E−11

TGM1 CNFN KRT17 TCHH SPRR2D TMEM79 SPRR2A KRT37 PI3 KLK14 KRT82 KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81

Animal organ development

62

3779

4.72E−11

SPRR2D HEYL SIX2 SPRR2A HGF TGM1 ZBTB16 BMP4 FGF7 GREB1L AJAP1 MAFB MYOC USP2 PITX1 NOTCH3 WNT11 ANGPT2 SLC8A3 SMPD3 CNFN DLX5 ALOX12 MDFI SDC1 ID3 TBX4 KRT17 CYP19A1 COL8A1 RSPO3 FGF18 TCHH PKDCC ELF3 TMEM79 ZC3H12A AVPR1A GREM1 ROR2 ADRB2 OVOL1 JUP SOX11 ALOX12B CCBE1 NRARP PAPSS2 KRT25 TBX1 CLDN4 SIK1 ACTG2 KRT37 PI3 KLK14 KRT82 KLK13 KRT80 KLK12 SPINK9 KRT81

Epidermal cell differentiation

21

410

5.29E−11

SPRR2D OVOL1 SPRR2A TGM1 BMP4 CNFN KRT17 TCHH TMEM79 SULT2B1 KRT37 PI3 KLK14 KRT82 KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81

Epidermis development

23

521

6.96E−11

KLK14 SPRR2D OVOL1 SPRR2A TGM1 BMP4 CNFN KRT17 FGF7 TCHH TMEM79 KRT25 SULT2B1 ELF3 KRT37 PI3 KRT82 KLK13 KRT80 JUP KLK12 SPINK9 KRT81

Keratinocyte differentiation

18

346

1.87E−09

SPRR2D SPRR2A TGM1 CNFN KRT17 TCHH TMEM79 KRT37 PI3 KLK14 KRT82 KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81

Ossification

18

396

1.56E−08

MYOC ZBTB16 BMP4 TWIST2 WNT11 SMPD3 DLX5 ID3 GDPD2 FGF18 PKDCC ROR2 ADRB2 SIX2 SOX11 GREM1 CREB3L1 HGF

Cellular developmental process

64

4671

3.21E−08

WNT11 DLX5 ID3 BMP4 NGF SPRR2D ELF3 HEYL OVOL1 RHOD SOX11 SPRR2A MYOC TGM1 ZC3H12A GREM1 AJAP1 MAFB TWIST2 HGF PITX1 NOTCH3 ANGPT2 SLC8A3 SMPD3 CNFN ZBTB16 MDFI SDC1 KRT17 CHN1 GDPD2 CATSPERB CD36 SIK1 ADAMTSL4 FGF18 TCHH FBLIM1 PKDCC TMEM79 AVPR1A ROR2 ADRB2 SIX2 GTSF1 NRARP COL8A1 SULT2B1 CREB3L1 S100A9 TBX1 RHCG KRT37 PI3 KLK14 KRT82 KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81

Cell differentiation

62

4459

3.79E−08

WNT11 DLX5 ID3 BMP4 NGF SPRR2D ELF3 HEYL OVOL1 SOX11 SPRR2A MYOC TGM1 ZC3H12A AJAP1 MAFB TWIST2 HGF PITX1 NOTCH3 ANGPT2 SLC8A3 SMPD3 CNFN ZBTB16 MDFI SDC1 KRT17 CHN1 GDPD2 CATSPERB CD36 SIK1 ADAMTSL4 FGF18 TCHH PKDCC TMEM79 AVPR1A GREM1 ROR2 ADRB2 SIX2 GTSF1 NRARP COL8A1 SULT2B1 CREB3L1 S100A9 TBX1 RHCG KRT37 PI3 KLK14 KRT82 KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81

Anatomical structure morphogenesis

46

2785

1.00E−07

PITX1 DLX5 KLK14 NGF HEYL RHOD NRARP HGF MYOC BMP4 IL1RN FGF7 ZC3H12A GREM1 AJAP1 NOTCH3 WNT11 ANGPT2 SMPD3 ALOX12 ZBTB16 MDFI SDC1 ID3 TBX4 KRT17 CHN1 CD36 GREB1L COL8A1 RSPO3 FGF18 FBLIM1 PKDCC ELF3 TMEM79 ROR2 SIX2 SOX11 CCBE1 MAFB KRT25 CREB3L1 JUP TBX1 ACTG2

Tissue morphogenesis

21

719

8.87E−07

KLK14 NRARP HGF BMP4 AJAP1 WNT11 ALOX12 TBX4 KRT17 FGF7 GREB1L RSPO3 TMEM79 HEYL GREM1 ROR2 SIX2 SOX11 KRT25 ACTG2 TBX1

Regulation of cartilage development

8

68

1.39E−06

ZBTB16 BMP4 SMPD3 FGF18 PKDCC SIX2 GREM1 WNT11

Tube development

25

1062

1.93E−06

NRARP BMP4 FGF7 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 SMPD3 ALOX12 SDC1 TBX4 GREB1L COL8A1 RSPO3 FGF18 PKDCC HEYL GREM1 SIX2 SOX11 CCBE1 CREB3L1 JUP TBX1

Morphogenesis of an epithelium

18

581

3.91E−06

KLK14 NRARP HGF BMP4 AJAP1 WNT11 ALOX12 TBX4 KRT17 FGF7 GREB1L RSPO3 TMEM79 GREM1 ROR2 SIX2 SOX11 KRT25

Urogenital system development

14

346

4.57E−06

SIX2 BMP4 GREB1L NOTCH3 WNT11 ANGPT2 ZBTB16 SDC1 ID3 CYP19A1 HEYL GREM1 OVOL1 SOX11

Kidney development

13

291

4.57E−06

SIX2 BMP4 GREB1L NOTCH3 WNT11 ANGPT2 ZBTB16 SDC1 ID3 HEYL GREM1 OVOL1 SOX11

Regulation of anatomical structure morphogenesis

25

1125

4.57E−06

NGF RHOD HGF MYOC BMP4 IL1RN FGF7 ZC3H12A AJAP1 WNT11 ANGPT2 ALOX12 CHN1 CD36 FBLIM1 GREM1 ROR2 SIX2 CCBE1 NRARP FGF18 CREB3L1 JUP TBX1 RSPO3

Regulation of ossification

11

193

4.57E−06

ZBTB16 BMP4 TWIST2 ID3 GDPD2 PKDCC ADRB2 SIX2 SOX11 GREM1 HGF

Skeletal system development

17

541

6.10E−06

ZBTB16 BMP4 MYOC PITX1 SMPD3 DLX5 MDFI FGF18 PKDCC ROR2 SIX2 SOX11 PAPSS2 WNT11 TBX4 GREM1 TBX1

Renal system development

13

307

7.35E−06

SIX2 BMP4 GREB1L NOTCH3 WNT11 ANGPT2 ZBTB16 SDC1 ID3 HEYL GREM1 OVOL1 SOX11

Animal organ morphogenesis

24

1099

1.06E−05

HEYL HGF BMP4 FGF7 AJAP1 WNT11 SMPD3 DLX5 MDFI SDC1 ID3 GREB1L COL8A1 FGF18 ELF3 GREM1 ROR2 SIX2 SOX11 MAFB TBX4 TBX1 ACTG2 RSPO3

Osteoblast differentiation

11

218

1.18E−05

MYOC BMP4 TWIST2 WNT11 DLX5 ID3 GDPD2 GREM1 SOX11 CREB3L1 HGF

Regulation of developmental process

41

2763

1.21E−05

ID3 NGF HEYL RHOD HGF MYOC ZBTB16 BMP4 IL1RN FGF7 ZC3H12A AJAP1 MAFB TWIST2 NOTCH3 WNT11 ANGPT2 SMPD3 ALOX12 KRT17 CHN1 GDPD2 CD36 FGF18 FBLIM1 PKDCC TMEM79 GREM1 ROR2 ADRB2 SIX2 SOX11 CCBE1 NRARP CREB3L1 JUP SULT2B1 SIK1 S100A9 TBX1 RSPO3

Anatomical structure formation involved in morphogenesis

24

1164

2.67E−05

DLX5 NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 SMPD3 TBX4 CD36 COL8A1 RSPO3 FGF18 HEYL GREM1 ROR2 SIX2 SOX11 CCBE1 MAFB CREB3L1 JUP TBX1

Skeletal system morphogenesis

11

245

3.39E−05

SMPD3 DLX5 MDFI BMP4 FGF18 ROR2 SIX2 SOX11 TBX4 GREM1 TBX1

Regulation of chondrocyte differentiation

6

49

3.91E−05

BMP4 FGF18 PKDCC SIX2 ZBTB16 GREM1

Appendage morphogenesis

9

155

3.91E−05

PITX1 DLX5 ZBTB16 TBX4 BMP4 PKDCC GREM1 ROR2 SOX11

Limb morphogenesis

9

155

3.91E−05

PITX1 DLX5 ZBTB16 TBX4 BMP4 PKDCC GREM1 ROR2 SOX11

Tube morphogenesis

20

860

3.91E−05

NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 ALOX12 TBX4 GREB1L COL8A1 RSPO3 FGF18 GREM1 SIX2 SOX11 CCBE1 CREB3L1 JUP TBX1

Regulation of morphogenesis of an epithelium

10

204

4.32E−05

HGF BMP4 AJAP1 WNT11 ALOX12 FGF7 GREM1 ROR2 SIX2 RSPO3

Epidermis morphogenesis

5

29

5.24E−05

KLK14 KRT17 FGF7 TMEM79 KRT25

Angiogenesis

15

511

5.42E−05

NRARP BMP4 ZC3H12A HGF NOTCH3 ANGPT2 TBX4 COL8A1 RSPO3 FGF18 GREM1 CCBE1 CREB3L1 JUP TBX1

Cell migration

27

1506

5.42E−05

HGF SDC1 IL36G IL1RN DEFB4A RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 S100A9 ZC3H12A ROR2 SIX2 WNT11 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 LTB4R2 JUP TWIST2 TBX1 S100A12

Cell death

36

2415

5.45E−05

HGF BMP4 NGF ADAMTSL4 ZNF385B S100A9 ZC3H12A WNT11 ALOX12 ZBTB16 ID3 CREB3L1 TMEM79 GREM1 SOX11 TWIST2 CD36 SIK1 TBX1 PNMA5 TGM1 KRT37 PI3 KRT17 KLK14 TCHH KRT82 SPRR2D KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81 SPRR2A

Respiratory system development

10

215

6.07E−05

BMP4 FGF7 SMPD3 DLX5 TBX4 FGF18 PKDCC SOX11 CCBE1 WNT11

Cartilage development

10

216

6.17E−05

ZBTB16 BMP4 PITX1 SMPD3 FGF18 PKDCC ROR2 SIX2 GREM1 WNT11

Positive regulation of ossification

7

88

6.78E−05

ZBTB16 BMP4 GDPD2 PKDCC ADRB2 SOX11 HGF

Regulation of multicellular organismal development

33

2138

7.25E−05

ID3 NGF HEYL HGF ZBTB16 BMP4 IL1RN FGF7 ZC3H12A AJAP1 MAFB NOTCH3 WNT11 ANGPT2 SMPD3 ALOX12 KRT17 CHN1 FGF18 PKDCC GREM1 ROR2 ADRB2 SIX2 SOX11 CCBE1 NRARP CREB3L1 JUP SULT2B1 S100A9 TBX1 RSPO3

Blood vessel morphogenesis

16

603

7.46E−5

NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 TBX4 COL8A1 RSPO3 FGF18 GREM1 CCBE1 CREB3L1 JUP TBX1

Programmed cell death

34

2257

8.00E−05

HGF BMP4 NGF ADAMTSL4 ZNF385B S100A9 WNT11 ALOX12 ZBTB16 ID3 CREB3L1 TMEM79 ZC3H12A GREM1 TWIST2 SIK1 TBX1 PNMA5 TGM1 KRT37 PI3 KRT17 KLK14 TCHH KRT82 SPRR2D KLK13 KRT80 JUP KLK12 KRT25 SPINK9 KRT81 SPRR2A

Blood vessel development

17

687

8.58E−05

HEYL NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 TBX4 COL8A1 RSPO3 FGF18 GREM1 CCBE1 CREB3L1 JUP TBX1

Embryonic morphogenesis

16

615

8.98E−05

BMP4 IL1RN PITX1 WNT11 DLX5 ZBTB16 MDFI TBX4 RSPO3 GREM1 ROR2 SIX2 SOX11 MAFB COL8A1 TBX1

Cell motility

28

1670

9.30E−05

HGF SDC1 IL36G IL1RN DEFB4A RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 S100A9 ZC3H12A ROR2 SIX2 WNT11 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 LTB4R2 DUOX1 JUP TWIST2 TBX1 S100A12

Localization of cell

28

1670

9.30E−05

HGF SDC1 IL36G IL1RN DEFB4A RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 S100A9 ZC3H12A ROR2 SIX2 WNT11 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 LTB4R2 DUOX1 JUP TWIST2 TBX1 S100A12

Cellular response to growth factor stimulus

17

694

9.30E−05

HGF BMP4 NGF FGF18 CREB3L1 GREM1 CCBE1 FAM83G ANGPT2 SMPD3 DLX5 RASL11B FGF7 HEYL ROR2 SOX11 TBX1

Cell–cell signaling

29

1774

9.65E−05

WNT11 CHRNA4 NGF RSPO3 NRARP JUP HGF CYP19A1 GREM1 FAM3D SLC8A3 SMPD3 DLX5 SDC1 BMP4 IL1RN FGF7 ROR2 ADRB2 SOX11 LYNX1 MYOC G6PC2 MDFI GLP1R IL36G FGF18 S100A9 ADRA1D

Tissue migration

11

293

1.10E−04

ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ALOX12 GREM1 CCBE1 LTB4R2 JUP ACTG2

Appendage development

9

186

1.10E−04

PITX1 DLX5 ZBTB16 TBX4 BMP4 PKDCC GREM1 ROR2 SOX11

Limb development

9

186

1.10E−04

PITX1 DLX5 ZBTB16 TBX4 BMP4 PKDCC GREM1 ROR2 SOX11

Lung development

9

188

1.18E−04

BMP4 FGF7 SMPD3 TBX4 FGF18 PKDCC SOX11 CCBE1 WNT11

Vasculature development

17

715

1.20E−04

HEYL NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 TBX4 COL8A1 RSPO3 FGF18 GREM1 CCBE1 CREB3L1 JUP TBX1

Respiratory tube development

9

192

1.34E−04

BMP4 FGF7 SMPD3 TBX4 FGF18 PKDCC SOX11 CCBE1 WNT11

Response to growth factor

17

723

1.34E−04

HGF BMP4 NGF FGF18 CREB3L1 GREM1 CCBE1 FAM83G ANGPT2 SMPD3 DLX5 RASL11B FGF7 HEYL ROR2 SOX11 TBX1

Cardiovascular system development

17

724

1.34E−04

HEYL NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 TBX4 COL8A1 RSPO3 FGF18 GREM1 CCBE1 CREB3L1 JUP TBX1

Locomotion

30

1921

1.34E−04

HGF SDC1 IL36G IL1RN DEFB4A RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 S100A9 ZC3H12A ROR2 SIX2 WNT11 BDKRB1 SMPD3 DLX5 ALOX12 CHN1 CYP19A1 GREM1 CCBE1 LTB4R2 DUOX1 JUP TWIST2 TBX1 S100A12

Mesonephros development

7

104

1.40E−04

BMP4 ZBTB16 SDC1 GREB1L GREM1 SIX2 WNT11

Positive regulation of developmental process

25

1433

1.40E−04

NGF MYOC ZBTB16 BMP4 FGF7 ZC3H12A HGF ANGPT2 ALOX12 KRT17 GDPD2 CD36 FGF18 PKDCC TMEM79 HEYL GREM1 ROR2 ADRB2 SOX11 CCBE1 JUP SULT2B1 S100A9 TBX1

Nephron development

8

147

1.41E−04

BMP4 NOTCH3 ANGPT2 GREB1L HEYL GREM1 SIX2 WNT11

Positive regulation of cell communication

30

1937

1.48E−04

BMP4 IL36G IL1RN RSPO3 NRARP JUP HGF MYOC KLK14 CYP19A1 FGF18 S100A9 S100A12 ZC3H12A ADRB2 ALOX12B CCBE1 SLC8A3 DLX5 CHN1 CD36 GREM1 ROR2 SOX11 WNT11 SH3RF3 NGF TBX1 FGF7 ELF3

Positive regulation of signaling

30

1945

1.56E−04

BMP4 IL36G IL1RN RSPO3 NRARP JUP HGF MYOC KLK14 CYP19A1 FGF18 S100A9 S100A12 ZC3H12A ADRB2 ALOX12B CCBE1 SLC8A3 DLX5 CHN1 CD36 GREM1 ROR2 SOX11 WNT11 SH3RF3 NGF TBX1 FGF7 ELF3

Circulatory system development

21

1077

1.56E−04

HEYL NRARP BMP4 ZC3H12A HGF NOTCH3 WNT11 ANGPT2 ID3 TBX4 GREB1L COL8A1 RSPO3 FGF18 GREM1 SOX11 CCBE1 CREB3L1 JUP TBX1 SIK1

Positive regulation of signal transduction

28

1762

1.91E−04

BMP4 IL36G IL1RN RSPO3 NRARP JUP HGF MYOC KLK14 FGF18 S100A9 S100A12 ZC3H12A ADRB2 ALOX12B CCBE1 DLX5 CHN1 CD36 GREM1 ROR2 SOX11 WNT11 SH3RF3 NGF TBX1 FGF7 ELF3

Ameboidal-type cell migration

12

392

2.39E−04

ANGPT2 BMP4 FGF7 FGF18 ZC3H12A WNT11 ALOX12 GREM1 CCBE1 LTB4R2 JUP TBX1

Regulation of osteoblast differentiation

7

115

2.44E−04

BMP4 TWIST2 ID3 GDPD2 GREM1 SOX11 HGF

Bone mineralization

7

116

2.55E−04

BMP4 WNT11 SMPD3 PKDCC ROR2 ADRB2 GREM1

Establishment of skin barrier

4

22

2.65E−04

ALOX12 TMEM79 ALOX12B CLDN4

Regulation of cell motility

19

946

2.69E−04

HGF RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 DUOX1 JUP TWIST2 WNT11

Mesenchymal cell proliferation

5

46

2.69E−04

BMP4 FGF7 WNT11 SIX2 TBX1

Positive regulation of cell motility

14

544

2.73E−04

HGF MYOC BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 ALOX12 CCBE1 DUOX1 TWIST2 WNT11 RHOD

Response to BMP

8

165

2.73E−04

BMP4 GREM1 FAM83G SMPD3 DLX5 HEYL ROR2 SOX11

Cellular response to BMP stimulus

8

165

2.73E−04

BMP4 GREM1 FAM83G SMPD3 DLX5 HEYL ROR2 SOX11

Biomineral tissue development

8

167

2.93E−04

BMP4 WNT11 SMPD3 PKDCC ROR2 ADRB2 GREM1 TBX1

Connective tissue development

10

280

3.18E−04

ZBTB16 BMP4 PITX1 SMPD3 FGF18 PKDCC ROR2 SIX2 GREM1 WNT11

Regulation of animal organ morphogenesis

10

281

3.22E−04

HGF BMP4 FGF7 AJAP1 WNT11 GREM1 ROR2 SIX2 TBX1 RSPO3

Embryo development

20

1054

3.22E−04

BMP4 IL1RN PITX1 WNT11 DLX5 ZBTB16 MDFI ID3 TBX4 RSPO3 PKDCC ELF3 GREM1 ROR2 SIX2 SOX11 NRARP MAFB COL8A1 TBX1

Chondrocyte differentiation

7

123

3.22E−04

SMPD3 BMP4 FGF18 PKDCC SIX2 ZBTB16 GREM1

Epithelial cell migration

10

284

3.33E−04

ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ALOX12 GREM1 CCBE1 LTB4R2 JUP

Regulation of cell migration

18

883

3.33E−04

HGF RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 JUP TWIST2 WNT11

Positive regulation of cellular component movement

14

558

3.33E−04

HGF MYOC BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 ALOX12 CCBE1 DUOX1 TWIST2 WNT11 RHOD

Epithelium migration

10

287

3.60E−04

ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ALOX12 GREM1 CCBE1 LTB4R2 JUP

Hair follicle morphogenesis

4

25

3.68E−04

KRT17 FGF7 TMEM79 KRT25

Regulation of water loss via skin

4

25

3.68E−04

ALOX12 TMEM79 ALOX12B CLDN4

Embryonic limb morphogenesis

7

130

4.20E−04

PITX1 DLX5 ZBTB16 TBX4 BMP4 GREM1 ROR2

Embryonic appendage morphogenesis

7

130

4.20E−04

PITX1 DLX5 ZBTB16 TBX4 BMP4 GREM1 ROR2

Positive regulation of locomotion

14

576

4.34E−04

HGF MYOC BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 ALOX12 CCBE1 DUOX1 TWIST2 WNT11 RHOD

Endochondral ossification

4

27

4.78E−04

SMPD3 DLX5 BMP4 FGF18

Replacement ossification

4

27

4.78E−04

SMPD3 DLX5 BMP4 FGF18

Positive regulation of MAPK cascade

14

583

4.79E−04

IL36G IL1RN BMP4 FGF18 ZC3H12A ADRB2 ALOX12B HGF CD36 ROR2 SH3RF3 TBX1 NGF S100A12

Poly-N-acetyllactosamine biosynthetic process

3

10

5.48E−04

B3GNT4 B3GNT8 B3GNT3

Regulation of multicellular organismal process

41

3382

5.95E−04

ID3 NGF IL36G IL1RN HEYL AVPR1A ADRB2 HGF ANGPT2 ZBTB16 BMP4 FGF7 FGF18 ZC3H12A CCBE1 AJAP1 MAFB TWIST2 NOTCH3 WNT11 SLC8A3 SMPD3 ALOX12 GLP1R KRT17 CHN1 GDPD2 CD36 PKDCC GREM1 ROR2 SIX2 SOX11 NRARP CREB3L1 JUP SULT2B1 ALOX12B S100A9 TBX1 RSPO3

Response to endogenous stimulus

26

1704

5.97E−04

BMP4 NGF AVPR1A IL1RN FGF18 CREB3L1 HEYL GREM1 JUP FAM83G SLC8A3 CHRNA4 SMPD3 DLX5 GLP1R SDC1 RASL11B CD36 FGF7 ROR2 ADRB2 SOX11 CLDN4 TBX1 GNA15 CATSPERB

Positive regulation of cell migration

13

521

6.09E−04

HGF MYOC BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 ALOX12 CCBE1 TWIST2 WNT11 RHOD

Chemotaxis

15

680

6.18E−04

IL36G IL1RN DEFB4A HGF ANGPT2 FGF7 FGF18 S100A9 DLX5 BMP4 CHN1 CYP19A1 GREM1 S100A12 LTB4R2

Regulation of cellular component movement

19

1028

6.21E−04

HGF RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 DUOX1 JUP TWIST2 WNT11

Movement of cell or subcellular component

30

2139

6.25E−04

HGF SDC1 IL36G IL1RN DEFB4A RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 S100A9 ZC3H12A ROR2 SIX2 WNT11 BDKRB1 SMPD3 DLX5 ALOX12 CHN1 CYP19A1 GREM1 CCBE1 LTB4R2 DUOX1 JUP TWIST2 TBX1 S100A12

Taxis

15

683

6.25E−04

IL36G IL1RN DEFB4A HGF ANGPT2 FGF7 FGF18 S100A9 DLX5 BMP4 CHN1 CYP19A1 GREM1 S100A12 LTB4R2

Nephron tubule development

6

96

6.25E−04

BMP4 GREB1L HEYL GREM1 SIX2 WNT11

Embryonic organ development

12

452

6.34E−04

WNT11 DLX5 MDFI ID3 BMP4 RSPO3 PKDCC ROR2 SIX2 SOX11 MAFB TBX1

Morphogenesis of a branching epithelium

8

194

6.34E−04

NRARP HGF BMP4 FGF7 GREB1L RSPO3 GREM1 SIX2

Kidney epithelium development

7

143

6.55E−04

BMP4 SDC1 GREB1L HEYL GREM1 SIX2 WNT11

Poly-N-acetyllactosamine metabolic process

3

11

6.64E−04

B3GNT4 B3GNT8 B3GNT3

Positive regulation of intracellular signal transduction

20

1133

6.72E−04

IL36G IL1RN HGF MYOC BMP4 FGF18 S100A9 S100A12 ZC3H12A ADRB2 ALOX12B CD36 GREM1 ROR2 SOX11 WNT11 SH3RF3 NGF TBX1 FGF7

Regulation of locomotion

19

1041

6.74E−04

HGF RHOD MYOC ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ROR2 BDKRB1 SMPD3 ALOX12 CYP19A1 GREM1 CCBE1 DUOX1 JUP TWIST2 WNT11

Ureteric bud development

6

99

6.85E−04

BMP4 SDC1 GREB1L GREM1 SIX2 WNT11

Renal tubule development

6

99

6.85E−04

BMP4 GREB1L HEYL GREM1 SIX2 WNT11

Positive regulation of cartilage development

4

31

6.94E−04

ZBTB16 BMP4 FGF18 PKDCC

Mesonephric epithelium development

6

100

7.06E−04

BMP4 SDC1 GREB1L GREM1 SIX2 WNT11

Mesonephric tubule development

6

100

7.06E−04

BMP4 SDC1 GREB1L GREM1 SIX2 WNT11

Positive regulation of gene expression

29

2060

7.22E−04

DLX5 ZBTB16 HEYL JUP SOX11 BMP4 ELF3 ZC3H12A CCBE1 PITX1 NOTCH3 ALOX12 KRT17 CD36 FGF7 CREB3L1 GREM1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 NGF ALOX12B GLIS3 ACTG2 TBX1 HGF

Regulation of morphogenesis of a branching structure

5

63

7.98E−04

HGF BMP4 FGF7 GREM1 SIX2

BMP signaling pathway

7

152

8.66E−04

BMP4 GREM1 FAM83G SMPD3 DLX5 ROR2 SOX11

Endothelial cell migration

8

206

8.66E−04

ANGPT2 BMP4 FGF18 ZC3H12A ALOX12 GREM1 CCBE1 JUP

Morphogenesis of a branching structure

8

208

9.13E−04

NRARP HGF BMP4 FGF7 GREB1L RSPO3 GREM1 SIX2

Mesenchymal to epithelial transition involved in metanephros morphogenesis

3

13

1.01E−03

BMP4 GREM1 SIX2

Mesenchymal cell differentiation

8

212

1.01E−03

WNT11 BMP4 HEYL SIX2 SOX11 GREM1 TBX1 HGF

Mesenchyme development

9

273

1.01E−03

WNT11 BMP4 HEYL SIX2 SOX11 GREM1 ACTG2 TBX1 HGF

Ureteric bud morphogenesis

5

67

1.01E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Mesonephric tubule morphogenesis

5

68

1.08E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Regulation of cell-substrate adhesion

8

216

1.13E−03

MYOC CD36 AJAP1 ANGPT2 COL8A1 GREM1 RHOD JUP

Regulation of endothelial cell migration

7

161

1.16E−03

ANGPT2 BMP4 FGF18 ZC3H12A ALOX12 CCBE1 JUP

Positive regulation of multicellular organismal process

27

1911

1.17E−03

NGF IL36G IL1RN AVPR1A ZBTB16 BMP4 FGF7 FGF18 ZC3H12A CCBE1 HGF WNT11 ANGPT2 ALOX12 KRT17 GDPD2 CD36 PKDCC HEYL GREM1 ROR2 ADRB2 SOX11 JUP ALOX12B S100A9 TBX1

Nephron epithelium development

6

112

1.18E−03

BMP4 GREB1L HEYL GREM1 SIX2 WNT11

Regulation of epithelial cell migration

8

223

1.36E−03

ANGPT2 BMP4 FGF7 FGF18 ZC3H12A ALOX12 CCBE1 JUP

Positive regulation of epidermis development

4

38

1.36E−03

BMP4 KRT17 TMEM79 SULT2B1

Aminoglycan biosynthetic process

6

116

1.39E−03

B3GNT4 B3GNT8 B3GNT3 SMPD3 SDC1 HS3ST3A1

Positive regulation of angiogenesis

7

167

1.39E−03

ZC3H12A HGF ANGPT2 GREM1 CCBE1 FGF18 JUP

Sprouting angiogenesis

6

117

1.45E−03

NRARP BMP4 RSPO3 GREM1 CREB3L1 CCBE1

Cell-substrate adhesion

10

358

1.46E−03

LYPD3 LYPD5 MYOC CD36 AJAP1 ANGPT2 COL8A1 GREM1 RHOD JUP

Sulfate assimilation

2

3

1.52E−03

PAPSS2 SULT2B1

Cuticle development

2

3

1.52E−03

TMEM79 DUOX1

Cloacal septation

2

3

1.52E−03

BMP4 WNT11

Aminoglycan metabolic process

7

171

1.53E−03

B3GNT4 B3GNT8 B3GNT3 HGF SMPD3 SDC1 HS3ST3A1

Cardiac septum morphogenesis

5

75

1.53E−03

HEYL WNT11 BMP4 SOX11 TBX1

Cellular response to endogenous stimulus

22

1432

1.61E−03

BMP4 NGF AVPR1A FGF18 CREB3L1 HEYL GREM1 JUP FAM83G SLC8A3 CHRNA4 SMPD3 DLX5 GLP1R RASL11B FGF7 ROR2 ADRB2 SOX11 CD36 TBX1 GNA15

Nephron tubule morphogenesis

5

76

1.61E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Metanephric renal vesicle morphogenesis

3

16

1.65E−03

BMP4 GREM1 SIX2

Regulation of cell–matrix adhesion

6

122

1.68E−03

MYOC CD36 AJAP1 GREM1 RHOD JUP

Outflow tract morphogenesis

5

77

1.68E−03

WNT11 BMP4 HEYL SOX11 TBX1

Nephron epithelium morphogenesis

5

78

1.77E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Ventricular septum morphogenesis

4

42

1.79E−03

HEYL WNT11 BMP4 SOX11

Cell–matrix adhesion

8

239

1.91E−03

LYPD3 LYPD5 MYOC CD36 AJAP1 GREM1 RHOD JUP

Embryonic organ morphogenesis

9

305

1.91E−03

WNT11 DLX5 MDFI BMP4 ROR2 SIX2 SOX11 MAFB TBX1

Renal tubule morphogenesis

5

80

1.91E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Nephron morphogenesis

5

80

1.91E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Nephric duct development

3

17

1.91E−03

BMP4 GREB1L WNT11

Regulation of cell communication

43

3903

2.15E−03

BMP4 NGF IL36G IL1RN SIK1 RSPO3 NRARP JUP HGF MYOC KLK14 CYP19A1 FGF18 CREB3L1 S100A9 S100A12 ZC3H12A HEYL GREM1 ADRB2 ALOX12B LYNX1 CCBE1 FAM3D WNT11 SLC8A3 CHRNA4 DLX5 RASL11B CHN1 CD36 FGF7 AVPR1A ROR2 SOX11 G6PC2 SH3RF3 MDFI TBX1 NOTCH3 GLP1R ELF3 RHOD

Enzyme linked receptor protein signaling pathway

18

1072

2.17E−03

HGF BMP4 NGF ROR2 ANGPT2 CREB3L1 GREM1 CCBE1 FAM83G MYOC SMPD3 DLX5 RASL11B FGF7 FGF18 SOX11 CHN1 ADRB2

Regulation of MAPK cascade

15

793

2.17E−03

BMP4 IL36G IL1RN MYOC FGF18 ZC3H12A ADRB2 ALOX12B HGF CD36 ROR2 SH3RF3 TBX1 NGF S100A12

Embryonic skeletal system development

6

130

2.21E−03

MDFI BMP4 SIX2 SOX11 WNT11 TBX1

Positive regulation of vasculature development

7

186

2.29E−03

ZC3H12A HGF ANGPT2 GREM1 CCBE1 FGF18 JUP

Response to organic substance

40

3547

2.30E−03

HGF BMP4 NGF IL36G IL1RN AVPR1A CD36 DUOX1 FGF18 CREB3L1 ZC3H12A HEYL GREM1 JUP CCBE1 FAM83G ANGPT2 SLC8A3 BDKRB1 CHRNA4 SMPD3 DLX5 ALOX12 GLP1R SDC1 ID3 SLPI RASL11B FGF7 ROR2 ADRB2 ABCG4 SOX11 CLDN4 WNT11 TBX1 GNA15 CATSPERB HSPB3 GPX3

Positive chemotaxis

5

84

2.30E−03

ANGPT2 FGF7 HGF BMP4 DEFB4A

Response to psychosocial stress

2

4

2.56E−03

GLP1R ADRB2

Cloaca development

2

4

2.56E−03

BMP4 WNT11

Positive regulation of epithelial cell proliferation

7

190

2.56E−03

NRARP BMP4 FGF7 DLX5 SOX11 TGM1 TBX1

Regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling

2

4

2.56E−03

HGF FGF7

Myoblast differentiation

5

87

2.62E−03

BMP4 PITX1 SDC1 ID3 GREM1

Regulation of signaling

43

3952

2.64E−03

BMP4 NGF IL36G IL1RN SIK1 RSPO3 NRARP JUP HGF MYOC KLK14 CYP19A1 FGF18 CREB3L1 S100A9 S100A12 ZC3H12A HEYL GREM1 ADRB2 ALOX12B LYNX1 CCBE1 FAM3D WNT11 SLC8A3 CHRNA4 DLX5 RASL11B CHN1 CD36 FGF7 AVPR1A ROR2 SOX11 G6PC2 SH3RF3 MDFI TBX1 NOTCH3 GLP1R ELF3 RHOD

Negative regulation of transcription, DNA-templated

20

1298

2.73E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 HEYL PITX1 NOTCH3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Positive regulation of chondrocyte differentiation

3

20

2.78E−03

FGF18 PKDCC ZBTB16

Mesenchymal to epithelial transition

3

20

2.78E−03

BMP4 GREM1 SIX2

Renal vesicle morphogenesis

3

20

2.78E−03

BMP4 GREM1 SIX2

Response to oxygen-containing compound

24

1725

2.88E−03

IL36G IL1RN HGF DUOX1 ZC3H12A JUP ANGPT2 SLC8A3 BDKRB1 CHRNA4 SMPD3 GLP1R SDC1 ID3 SLPI CD36 AVPR1A ADRB2 CLDN4 WNT11 TBX1 GNA15 CATSPERB GPX3

Regulation of vasculature development

9

328

2.89E−03

BMP4 ZC3H12A HGF ANGPT2 GREM1 CCBE1 FGF18 CREB3L1 JUP

Digestive tract morphogenesis

4

50

3.01E−03

BMP4 SIX2 SOX11 WNT11

Metanephros development

5

91

3.04E−03

BMP4 ID3 GREB1L GREM1 SIX2

Positive regulation of epithelial cell migration

6

141

3.04E−03

BMP4 FGF7 FGF18 ZC3H12A ALOX12 CCBE1

Regulation of cell differentiation

26

1954

3.04E−03

ID3 NGF HEYL MYOC BMP4 ZC3H12A AJAP1 MAFB TWIST2 HGF NOTCH3 ZBTB16 CHN1 GDPD2 CD36 FGF18 PKDCC GREM1 ROR2 SIX2 SOX11 NRARP SULT2B1 SIK1 S100A9 TBX1

Copulation

3

21

3.06E−03

KLK14 PI3 AVPR1A

Positive regulation of cell differentiation

17

1018

3.06E−03

NGF MYOC BMP4 ZC3H12A HGF ZBTB16 GDPD2 CD36 FGF18 PKDCC HEYL GREM1 ROR2 SOX11 SULT2B1 S100A9 TBX1

Renal vesicle development

3

21

3.06E−03

BMP4 GREM1 SIX2

Cell surface receptor signaling pathway involved in cell–cell signaling

13

654

3.16E−03

WNT11 RSPO3 NRARP JUP GREM1 CHRNA4 DLX5 SDC1 ROR2 ADRB2 MYOC BMP4 MDFI

Roof of mouth development

5

93

3.25E−03

WNT11 DLX5 PKDCC SOX11 TBX1

Leukocyte migration

11

491

3.36E−03

IL36G IL1RN S100A9 BDKRB1 SMPD3 CYP19A1 GREM1 ROR2 ANGPT2 SDC1 S100A12

Cell chemotaxis

9

339

3.45E−03

IL36G IL1RN DEFB4A HGF FGF18 S100A9 CYP19A1 GREM1 S100A12

Sensory organ morphogenesis

8

270

3.53E−03

DLX5 BMP4 COL8A1 ROR2 SIX2 SOX11 MAFB TBX1

Negative regulation of cellular biosynthetic process

23

1658

3.67E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 ZC3H12A HEYL PITX1 NOTCH3 SMPD3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI SIK1 TWIST2

Hepoxilin metabolic process

2

5

3.67E−03

ALOX12 ALOX12B

Hepoxilin biosynthetic process

2

5

3.67E−03

ALOX12 ALOX12B

Glomerulus vasculature morphogenesis

2

5

3.67E−03

NOTCH3 BMP4

Glomerular capillary formation

2

5

3.67E−03

NOTCH3 BMP4

Negative regulation of RNA metabolic process

21

1446

3.68E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 ZC3H12A HEYL PITX1 NOTCH3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Embryonic skeletal system morphogenesis

5

97

3.70E−03

MDFI BMP4 SIX2 SOX11 TBX1

Kidney morphogenesis

5

97

3.70E−03

BMP4 GREB1L GREM1 SIX2 WNT11

Cellular response to chemical stimulus

39

3536

3.70E−03

HGF BMP4 NGF IL36G IL1RN AVPR1A DEFB4A DUOX1 FGF18 CREB3L1 S100A9 S100A12 ZC3H12A HEYL GREM1 JUP CCBE1 FAM83G ANGPT2 SLC8A3 CHRNA4 SMPD3 DLX5 ALOX12 GLP1R ID3 RASL11B CD36 CYP19A1 FGF7 ROR2 ADRB2 ABCG4 SOX11 GPX3 WNT11 TBX1 GNA15 SDC1

Positive regulation of endothelial cell migration

5

98

3.86E−03

BMP4 FGF18 ZC3H12A ALOX12 CCBE1

Regulation of cell adhesion

14

765

3.94E−03

MYOC CD36 IL1RN AJAP1 ANGPT2 ALOX12 ZBTB16 COL8A1 ZC3H12A GREM1 RHOD NRARP JUP BMP4

Negative regulation of nucleic acid-templated transcription

20

1353

3.96E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 HEYL PITX1 NOTCH3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Cellular response to organic substance

34

2938

3.99E−03

HGF BMP4 NGF IL36G IL1RN AVPR1A DUOX1 FGF18 CREB3L1 ZC3H12A HEYL GREM1 JUP CCBE1 FAM83G ANGPT2 SLC8A3 CHRNA4 SMPD3 DLX5 ALOX12 GLP1R ID3 RASL11B CD36 FGF7 ROR2 ADRB2 ABCG4 SOX11 WNT11 TBX1 GNA15 SDC1

Negative regulation of RNA biosynthetic process

20

1355

3.99E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 HEYL PITX1 NOTCH3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Regulation of branching involved in ureteric bud morphogenesis

3

24

4.06E−03

BMP4 GREM1 SIX2

Intermediate filament organization

3

24

4.06E−03

TCHH KRT17 KRT25

Positive regulation of transcription by RNA polymerase II

19

1255

4.06E−03

DLX5 ZBTB16 HEYL JUP SOX11 BMP4 ZC3H12A PITX1 NOTCH3 CREB3L1 ELF3 GREM1 ADRB2 SIX2 OVOL1 MAFB GLIS3 TBX1 HGF

Glomerulus vasculature development

3

24

4.06E−03

BMP4 NOTCH3 ANGPT2

Negative regulation of biosynthetic process

23

1681

4.10E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 ZC3H12A HEYL PITX1 NOTCH3 SMPD3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI SIK1 TWIST2

Carbohydrate biosynthetic process

7

214

4.10E−03

G6PC2 B3GNT4 B3GNT8 B3GNT3 SMPD3 CHST8 SIK1

Positive regulation of protein phosphorylation

17

1057

4.10E−03

HGF BMP4 IL36G IL1RN FGF7 FGF18 ZC3H12A ADRB2 ALOX12B WNT11 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Negative regulation of nucleobasE−containing compound metabolic process

22

1575

4.15E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 CDA ELF3 ZC3H12A HEYL PITX1 NOTCH3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Regionalization

9

355

4.24E−03

BMP4 ZBTB16 GREM1 ROR2 SIX2 NRARP MAFB MDFI TBX1

Regulation of protein import into nucleus

4

58

4.41E−03

BMP4 ZC3H12A JUP CD36

Negative regulation of macromolecule biosynthetic process

22

1597

4.86E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 ZC3H12A HEYL PITX1 NOTCH3 SMPD3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Positive regulation of osteoblast differentiation

4

60

4.86E−03

BMP4 GDPD2 SOX11 HGF

Positive regulation of transcription, DNA-templated

22

1599

4.86E−03

DLX5 ZBTB16 HEYL JUP SOX11 BMP4 ELF3 ZC3H12A PITX1 NOTCH3 FGF7 CREB3L1 GREM1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1 HGF

Renal system vasculature development

3

26

4.86E−03

BMP4 NOTCH3 ANGPT2

Kidney vasculature development

3

26

4.86E−03

BMP4 NOTCH3 ANGPT2

Cell differentiation involved in metanephros development

3

26

4.86E−03

BMP4 GREM1 SIX2

Metanephric nephron morphogenesis

3

26

4.86E−03

BMP4 GREM1 SIX2

Glycosaminoglycan metabolic process

6

161

4.99E−03

HGF SMPD3 SDC1 HS3ST3A1 B3GNT4 B3GNT3

Regulation of protein import

4

61

5.07E−03

BMP4 ZC3H12A JUP CD36

Branching involved in ureteric bud morphogenesis

4

61

5.07E−03

BMP4 GREB1L GREM1 SIX2

Glomerulus development

4

61

5.07E−03

BMP4 NOTCH3 ANGPT2 HEYL

Negative regulation of cartilage development

3

27

5.28E−03

BMP4 GREM1 WNT11

Regulation of mesonephros development

3

27

5.28E−03

BMP4 GREM1 SIX2

Bone development

7

228

5.49E−03

MYOC SMPD3 DLX5 BMP4 FGF18 PAPSS2 GREM1

Negative regulation of cellular macromolecule biosynthetic process

21

1511

5.53E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 ID3 CREB3L1 ELF3 ZC3H12A HEYL PITX1 NOTCH3 CD36 GREM1 NRARP USP2 WNT11 GLIS3 MDFI TWIST2

Regulation of angiogenesis

8

298

5.53E−03

ZC3H12A HGF ANGPT2 GREM1 CCBE1 FGF18 CREB3L1 JUP

Peptide cross-linking

4

63

5.57E−03

SPRR2D SPRR2A TGM1 PI3

Embryonic hindlimb morphogenesis

3

28

5.73E−03

PITX1 ZBTB16 BMP4

Secondary palate development

3

28

5.73E−03

SOX11 WNT11 TBX1

Glycosaminoglycan biosynthetic process

5

111

5.78E−03

SMPD3 SDC1 HS3ST3A1 B3GNT4 B3GNT3

Artery morphogenesis

4

64

5.81E−03

BMP4 NOTCH3 WNT11 TBX1

Regulation of localization

33

2905

5.84E−03

HGF RHOD MYOC ANGPT2 BMP4 CYP19A1 FGF7 FGF18 ZC3H12A ROR2 JUP FAM3D BDKRB1 CHRNA4 SMPD3 ALOX12 CD36 PKDCC AVPR1A GREM1 ADRB2 CLIC3 SOX11 CCBE1 KCNK12 DUOX1 TWIST2 WNT11 SDC1 G6PC2 ALOX12B SIK1 GLP1R

Cardiac septum development

5

112

5.93E−03

HEYL WNT11 BMP4 SOX11 TBX1

Positive regulation of cellular biosynthetic process

26

2082

5.95E−03

DLX5 ZBTB16 HEYL JUP SOX11 HGF BMP4 ELF3 ZC3H12A GREM1 PITX1 NOTCH3 KRT17 CD36 FGF7 CREB3L1 AVPR1A ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1 SMPD3

Response to lipid

16

1006

5.95E−03

IL36G IL1RN ZC3H12A HEYL BDKRB1 ALOX12 SDC1 ID3 SLPI CD36 AVPR1A CLDN4 BMP4 WNT11 TBX1 CATSPERB

MAPK cascade

16

1007

5.97E−03

BMP4 IL36G IL1RN MYOC FGF18 ZC3H12A ADRB2 ALOX12B HGF CD36 ROR2 SH3RF3 TBX1 NGF FGF7 S100A12

Negative regulation of cell adhesion

8

304

5.99E−03

MYOC IL1RN AJAP1 ANGPT2 ALOX12 ZC3H12A NRARP BMP4

Renal system vasculature morphogenesis

2

7

6.07E−03

NOTCH3 BMP4

Kidney vasculature morphogenesis

2

7

6.07E−03

NOTCH3 BMP4

Positive regulation of phosphorylation

17

1111

6.10E−03

HGF BMP4 IL36G IL1RN FGF7 FGF18 ZC3H12A ADRB2 ALOX12B WNT11 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Regulation of cell proliferation

23

1756

6.32E−03

NRARP BMP4 FGF7 GREM1 JUP NOTCH3 WNT11 SMPD3 DLX5 ALOX12 ZBTB16 RARRES1 FGF18 AVPR1A SIX2 OVOL1 SOX11 SULT2B1 TGM1 ROR2 TBX1 NGF ADRA1D

Negative regulation of nitrogen compound metabolic process

30

2564

6.32E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 HGF ID3 CREB3L1 CDA ELF3 ZC3H12A HEYL GREM1 PITX1 NOTCH3 BDKRB1 SMPD3 PI3 SLPI NGF CD36 NRARP SPINK9 COL28A1 USP2 WNT11 GLIS3 MDFI TWIST2

Cardiac chamber development

6

172

6.32E−03

HEYL WNT11 BMP4 GREB1L SOX11 TBX1

Negative regulation of developmental process

16

1017

6.40E−03

ID3 BMP4 MAFB TWIST2 NOTCH3 ANGPT2 ZBTB16 ZC3H12A ADRB2 SIX2 SOX11 NRARP CREB3L1 GREM1 TBX1 WNT11

Signal transduction by protein phosphorylation

16

1018

6.44E−03

BMP4 IL36G IL1RN MYOC FGF18 ZC3H12A ADRB2 ALOX12B HGF CD36 ROR2 SH3RF3 TBX1 NGF FGF7 S100A12

Transmembrane receptor protein tyrosine kinase signaling pathway

13

730

6.45E−03

HGF NGF ROR2 ANGPT2 CREB3L1 CCBE1 MYOC SMPD3 FGF7 FGF18 GREM1 CHN1 ADRB2

Cell adhesion

21

1541

6.46E−03

LYPD3 LYPD5 MYOC CD36 IL1RN S100A9 JUP AJAP1 ANGPT2 ALOX12 ZBTB16 COL8A1 FBLIM1 ZC3H12A GREM1 RHOD NRARP COL28A1 BMP4 CLDN4 LRRN2

Epithelial cell proliferation

9

387

6.56E−03

NRARP BMP4 FGF7 HGF DLX5 COL8A1 SOX11 TGM1 TBX1

Biological adhesion

21

1548

6.78E−03

LYPD3 LYPD5 MYOC CD36 IL1RN S100A9 JUP AJAP1 ANGPT2 ALOX12 ZBTB16 COL8A1 FBLIM1 ZC3H12A GREM1 RHOD NRARP COL28A1 BMP4 CLDN4 LRRN2

Myeloid leukocyte migration

7

241

6.79E−03

IL36G IL1RN S100A9 CYP19A1 GREM1 ROR2 S100A12

Positive regulation of biosynthetic process

26

2113

6.91E−03

DLX5 ZBTB16 HEYL JUP SOX11 HGF BMP4 CREB3L1 ELF3 ZC3H12A GREM1 PITX1 NOTCH3 KRT17 CD36 FGF7 AVPR1A ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1 SMPD3

Blood vessel endothelial cell migration

5

119

7.19E−03

ANGPT2 ALOX12 GREM1 FGF18 JUP

Mesenchymal cell differentiation involved in renal system development

2

8

7.48E−03

BMP4 SIX2

Mesenchymal-epithelial cell signaling

2

8

7.48E−03

HGF FGF7

Glomerulus morphogenesis

2

8

7.48E−03

NOTCH3 BMP4

Mesenchymal cell differentiation involved in kidney development

2

8

7.48E−03

BMP4 SIX2

Negative regulation of mesenchymal cell proliferation

2

8

7.48E−03

BMP4 WNT11

Negative regulation of cellular metabolic process

31

2724

7.59E−03

ZBTB16 BMP4 SIX2 OVOL1 SOX11 ZNF154 HGF ID3 CREB3L1 CDA ELF3 ZC3H12A HEYL GREM1 PITX1 NOTCH3 BDKRB1 SMPD3 PI3 SLPI NGF CD36 NRARP SPINK9 COL28A1 USP2 WNT11 GLIS3 MDFI SIK1 TWIST2

Multicellular organismal water homeostasis

4

71

7.63E−03

ALOX12 TMEM79 ALOX12B CLDN4

Endochondral bone morphogenesis

4

72

8.01E−03

SMPD3 DLX5 BMP4 FGF18

Metanephros morphogenesis

3

33

8.15E−03

BMP4 GREM1 SIX2

Positive regulation of nucleic acid-templated transcription

22

1694

8.53E−03

DLX5 ZBTB16 HEYL JUP SOX11 BMP4 ELF3 ZC3H12A PITX1 NOTCH3 FGF7 CREB3L1 GREM1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1 HGF

Positive regulation of RNA biosynthetic process

22

1695

8.56E−03

DLX5 ZBTB16 HEYL JUP SOX11 BMP4 ELF3 ZC3H12A PITX1 NOTCH3 FGF7 CREB3L1 GREM1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1 HGF

Positive regulation of morphogenesis of an epithelium

3

34

8.72E−03

ALOX12 BMP4 GREM1

Regulation of mesenchymal cell proliferation

3

34

8.72E−03

BMP4 WNT11 TBX1

Ventricular septum development

4

74

8.72E−03

HEYL WNT11 BMP4 SOX11

Ear morphogenesis

5

127

9.06E−03

DLX5 ROR2 SIX2 MAFB TBX1

Cell proliferation

26

2165

9.07E−03

NRARP DLX5 BMP4 FGF7 GREM1 SIX2 JUP HGF NOTCH3 WNT11 SMPD3 ALOX12 ZBTB16 RARRES1 COL8A1 FGF18 AVPR1A OVOL1 SOX11 SULT2B1 TGM1 SDCBP2 ROR2 TBX1 NGF ADRA1D

Soft palate development

2

9

9.07E−03

SOX11 TBX1

Regulation of branching involved in salivary gland morphogenesis

2

9

9.07E−03

HGF FGF7

Mesonephric duct development

2

9

9.07E−03

GREB1L WNT11

Regulation of DNA-binding transcription factor activity

10

495

9.09E−03

ID3 ZC3H12A HEYL JUP GREM1 CD36 SIK1 MDFI S100A9 S100A12

Regulation of hormone levels

11

583

9.12E−03

CYP19A1 FAM3D SMPD3 IL1RN DUOX1 CRABP1 SOX11 CHST8 G6PC2 GLP1R NGF

Water homeostasis

4

76

9.28E−03

ALOX12 TMEM79 ALOX12B CLDN4

Cellular response to toxic substance

7

259

9.32E−03

HGF SMPD3 CD36 DUOX1 S100A9 ZC3H12A GPX3

Cardiac chamber morphogenesis

5

129

9.38E−03

HEYL WNT11 BMP4 SOX11 TBX1

Cardiac ventricle development

5

130

9.67E−03

HEYL WNT11 BMP4 GREB1L SOX11

Regulation of signal transduction

37

3529

9.74E−03

BMP4 IL36G IL1RN SIK1 RSPO3 NRARP JUP HGF MYOC KLK14 FGF18 CREB3L1 S100A9 S100A12 ZC3H12A HEYL GREM1 ADRB2 ALOX12B LYNX1 CCBE1 WNT11 DLX5 RASL11B CHN1 NGF CD36 FGF7 ROR2 SOX11 FAM3D SH3RF3 MDFI TBX1 NOTCH3 ELF3 RHOD

Hindlimb morphogenesis

3

36

9.82E−03

PITX1 ZBTB16 BMP4

Odontogenesis

5

131

9.89E−03

SMPD3 SDC1 ID3 BMP4 TBX1

Regulation of bone mineralization

4

78

9.90E−03

BMP4 PKDCC ADRB2 GREM1

Polysaccharide biosynthetic process

4

78

9.90E−03

B3GNT4 B3GNT8 B3GNT3 SMPD3

Negative regulation of multicellular organismal process

18

1286

9.90E−03

ID3 ADRB2 ANGPT2 BMP4 ZC3H12A MAFB TWIST2 HGF NOTCH3 WNT11 ALOX12 ZBTB16 AVPR1A SOX11 NRARP CREB3L1 JUP GREM1

Regulation of protein phosphorylation

20

1503

9.92E−03

HGF BMP4 IL36G IL1RN MYOC FGF7 FGF18 ZC3H12A GREM1 ADRB2 ALOX12B WNT11 BDKRB1 SMPD3 CD36 ROR2 SH3RF3 TBX1 NGF S100A12

Cell surface receptor signaling pathway

35

3287

1.00E−02

HGF WNT11 BMP4 NGF IL36G IL1RN RSPO3 HEYL ROR2 NRARP JUP ANGPT2 DUOX1 CREB3L1 GREM1 CCBE1 FAM83G MYOC NOTCH3 CHRNA4 SMPD3 DLX5 GLP1R SDC1 RASL11B CD36 FGF7 FGF18 ZC3H12A ADRB2 SOX11 MDFI CHN1 CDA ELF3

Positive regulation of phosphorus metabolic process

17

1183

1.00E−02

HGF BMP4 IL36G IL1RN FGF7 FGF18 ZC3H12A ADRB2 ALOX12B WNT11 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Positive regulation of phosphate metabolic process

17

1183

1.00E−02

HGF BMP4 IL36G IL1RN FGF7 FGF18 ZC3H12A ADRB2 ALOX12B WNT11 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Cellular response to oxidised low-density lipoprotein particle stimulus

2

10

1.05E−02

SMPD3 CD36

Positive regulation of keratinocyte proliferation

2

10

1.05E−02

FGF7 TGM1

Positive regulation of mitochondrial depolarization

2

10

1.05E−02

MYOC ALOX12

Epithelial cell proliferation involved in lung morphogenesis

2

10

1.05E−02

BMP4 FGF7

Epithelial tube morphogenesis

8

344

1.06E−02

NRARP BMP4 ALOX12 GREB1L GREM1 SIX2 SOX11 WNT11

Epithelial to mesenchymal transition

5

135

1.08E−02

WNT11 BMP4 HEYL GREM1 HGF

Negative regulation of growth

7

269

1.08E−02

BMP4 CDA BDKRB1 CD36 GREM1 ADRB2 WNT11

Mesoderm development

5

136

1.11E−02

BMP4 WNT11 SIX2 OVOL1 TBX1

Canonical Wnt signaling pathway

8

350

1.16E−02

RSPO3 NRARP JUP GREM1 WNT11 DLX5 SDC1 ROR2

Digestive tract development

5

139

1.21E−02

BMP4 PKDCC SIX2 SOX11 WNT11

Mesenchymal cell development

4

84

1.23E−02

BMP4 HEYL SOX11 TBX1

Positive regulation of bone mineralization

3

40

1.24E−02

BMP4 PKDCC ADRB2

Embryonic digestive tract development

3

40

1.24E−02

PKDCC SIX2 SOX11

Regulation of cellular response to growth factor stimulus

7

277

1.24E−02

FGF18 CREB3L1 GREM1 CCBE1 BMP4 RASL11B SOX11

Cell fate commitment

7

277

1.24E−02

WNT11 BMP4 PITX1 NOTCH3 ROR2 SIX2 TBX1

Glycoprotein biosynthetic process

8

357

1.28E−02

HS3ST3A1 B3GNT4 FUT2 B3GNT8 B3GNT3 CHST8 ST8SIA2 ST6GAL2

Transmembrane receptor protein serine/threonine kinase signaling pathway

8

358

1.30E−02

BMP4 GREM1 FAM83G SMPD3 DLX5 RASL11B ROR2 SOX11

Axis specification

4

86

1.30E−02

BMP4 SIX2 NRARP MDFI

Negative regulation of T cell differentiation

3

41

1.30E−02

ZC3H12A NRARP BMP4

Positive regulation of nitrogen compound metabolic process

35

3351

1.30E−02

HGF DLX5 ZBTB16 BMP4 IL36G IL1RN HEYL JUP SOX11 FGF7 FGF18 S100A9 ELF3 ZC3H12A GREM1 ADRB2 ALOX12B CCBE1 PITX1 NOTCH3 WNT11 ALOX12 KRT17 CD36 CREB3L1 ROR2 SIX2 OVOL1 MAFB SH3RF3 GLIS3 TBX1 SMPD3 NGF S100A12

Metanephric nephron development

3

41

1.30E−02

BMP4 GREM1 SIX2

Negative regulation of cell communication

19

1440

1.31E−02

SIK1 NRARP HGF MYOC BMP4 KLK14 IL1RN CREB3L1 HEYL GREM1 ADRB2 FAM3D WNT11 RASL11B ZC3H12A AVPR1A ROR2 MDFI NOTCH3

Positive regulation of cellular metabolic process

36

3482

1.31E−02

HGF DLX5 ZBTB16 BMP4 IL36G IL1RN HEYL JUP SOX11 FGF7 FGF18 S100A9 ELF3 ZC3H12A GREM1 ADRB2 ALOX12B CCBE1 PITX1 NOTCH3 WNT11 ALOX12 KRT17 CD36 CREB3L1 AVPR1A ROR2 SIX2 OVOL1 MAFB SH3RF3 GLIS3 TBX1 SMPD3 NGF S100A12

Negative regulation of signaling

19

1444

1.35E−02

SIK1 NRARP HGF MYOC BMP4 KLK14 IL1RN CREB3L1 HEYL GREM1 ADRB2 FAM3D WNT11 RASL11B ZC3H12A AVPR1A ROR2 MDFI NOTCH3

Antimicrobial humoral response

5

145

1.38E−02

SLPI S100A9 S100A12 DEFB4A PI3

Hair follicle development

4

88

1.38E−02

KRT17 FGF7 TMEM79 KRT25

Regulation of epidermis development

4

88

1.38E−02

BMP4 KRT17 TMEM79 SULT2B1

Artery development

4

88

1.38E−02

BMP4 NOTCH3 WNT11 TBX1

Positive regulation of cell proliferation

15

1022

1.39E−02

NRARP BMP4 FGF7 GREM1 NOTCH3 SMPD3 DLX5 ALOX12 FGF18 AVPR1A SIX2 SOX11 TGM1 TBX1 ADRA1D

Positive regulation of response to stimulus

29

2621

1.39E−02

BMP4 IL36G IL1RN RSPO3 NRARP JUP HGF MYOC KLK14 FGF18 S100A9 S100A12 ZC3H12A ADRB2 ALOX12B CCBE1 DLX5 CHN1 CD36 GREM1 ROR2 SOX11 DUOX1 WNT11 SH3RF3 NGF TBX1 FGF7 ELF3

Positive regulation of RNA metabolic process

22

1789

1.39E−02

DLX5 ZBTB16 HEYL JUP SOX11 BMP4 ELF3 ZC3H12A PITX1 NOTCH3 FGF7 CREB3L1 GREM1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1 HGF

Positive regulation of membrane depolarization

2

12

1.39E−02

MYOC ALOX12

Regulation of intracellular signal transduction

24

2027

1.42E−02

BMP4 IL36G IL1RN SIK1 HGF MYOC FGF18 S100A9 S100A12 ZC3H12A ADRB2 ALOX12B CHN1 CD36 CREB3L1 GREM1 ROR2 SOX11 WNT11 SH3RF3 NGF TBX1 FGF7 RHOD

Positive regulation of cellular protein metabolic process

21

1680

1.42E−02

HGF BMP4 IL36G IL1RN FGF7 FGF18 S100A9 ZC3H12A ADRB2 ALOX12B CCBE1 WNT11 ALOX12 KRT17 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Lung alveolus development

3

43

1.42E−02

BMP4 SMPD3 PKDCC

Pattern specification process

9

451

1.42E−02

BMP4 ZBTB16 GREM1 ROR2 SIX2 NRARP MAFB MDFI TBX1

Growth

15

1028

1.44E−02

NGF BMP4 FGF7 CDA WNT11 BDKRB1 SMPD3 KRT17 CD36 CYP19A1 PKDCC AVPR1A GREM1 ADRB2 S100A9

Molting cycle process

4

90

1.44E−02

KRT17 FGF7 TMEM79 KRT25

Hair cycle process

4

90

1.44E−02

KRT17 FGF7 TMEM79 KRT25

Wnt signaling pathway

10

543

1.48E−02

WNT11 RSPO3 NRARP JUP GREM1 DLX5 SDC1 ROR2 MYOC MDFI

Negative regulation of osteoblast differentiation

3

44

1.49E−02

TWIST2 ID3 GREM1

Skin epidermis development

4

91

1.49E−02

KRT17 FGF7 TMEM79 KRT25

Regulation of Wnt signaling pathway

8

371

1.49E−02

RSPO3 NRARP JUP GREM1 WNT11 DLX5 ROR2 MDFI

Cell–cell signaling by wnt

10

545

1.50E−02

WNT11 RSPO3 NRARP JUP GREM1 DLX5 SDC1 ROR2 MYOC MDFI

Digestive system development

5

151

1.54E−02

BMP4 PKDCC SIX2 SOX11 WNT11

Insemination

2

13

1.57E−02

KLK14 AVPR1A

Extracellular structure organization

9

460

1.57E−02

COL8A1 COL28A1 SMPD3 CD36 ADAMTSL4 ELF3 SDC1 GREM1 CREB3L1

Protein import into nucleus

5

152

1.57E−02

BMP4 ZC3H12A JUP CD36 SIX2

Positive regulation of cell death

12

741

1.61E−02

BMP4 ADAMTSL4 S100A9 ZC3H12A WNT11 ALOX12 ZBTB16 ID3 CD36 SIK1 PNMA5 NGF

Muscle structure development

11

645

1.61E−02

BMP4 USP2 PITX1 SDC1 ID3 HEYL AVPR1A GREM1 SOX11 SIK1 TBX1

Anterior/posterior pattern specification

6

222

1.63E−02

BMP4 ZBTB16 ROR2 SIX2 NRARP TBX1

Epithelial cell differentiation involved in kidney development

3

46

1.63E−02

BMP4 GREM1 SIX2

Regulation of canonical Wnt signaling pathway

7

298

1.65E−02

RSPO3 NRARP JUP GREM1 WNT11 DLX5 ROR2

Regulation of blood vessel endothelial cell migration

4

95

1.68E−02

ANGPT2 ALOX12 FGF18 JUP

Secretion by cell

21

1715

1.70E−02

CYP19A1 FGF7 FAM3D CHRNA4 SMPD3 CD36 IL1RN TMEM79 ZC3H12A AVPR1A SOX11 SDC1 G6PC2 CREB3L1 HGF GLP1R SLPI CDA S100A9 S100A12 JUP

Gland development

9

468

1.71E−02

HGF PITX1 BMP4 CYP19A1 FGF7 ELF3 MAFB WNT11 TBX1

Embryonic cranial skeleton morphogenesis

3

47

1.71E−02

BMP4 SIX2 TBX1

Regulation of biomineral tissue development

4

97

1.78E−02

BMP4 PKDCC ADRB2 GREM1

Mating

3

48

1.80E−02

KLK14 PI3 AVPR1A

Response to external stimulus

28

2561

1.80E−02

IL36G IL1RN SIK1 DEFB4A HGF ANGPT2 SLPI CD36 FGF7 FGF18 S100A9 S100A12 ZC3H12A JUP AJAP1 USP2 WNT11 BDKRB1 DLX5 ALOX12 BMP4 CHN1 CYP19A1 AVPR1A GREM1 ADRB2 PI3 LTB4R2

Positive regulation of canonical Wnt signaling pathway

5

159

1.83E−02

RSPO3 NRARP JUP DLX5 ROR2

Positive regulation of protein modification process

17

1279

1.83E−02

HGF BMP4 IL36G IL1RN FGF7 FGF18 ZC3H12A ADRB2 ALOX12B WNT11 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Somite development

4

98

1.83E−02

WNT11 ROR2 SOX11 NRARP

Regulation of binding

8

388

1.83E−02

ID3 SLPI BMP4 ADRB2 SOX11 CD36 MDFI NGF

Genitalia development

3

49

1.87E−02

CYP19A1 GREB1L ROR2

Positive regulation of biomineral tissue development

3

49

1.87E−02

BMP4 PKDCC ADRB2

Ear development

6

232

1.93E−02

DLX5 BMP4 ROR2 SIX2 MAFB TBX1

Branching morphogenesis of an epithelial tube

5

162

1.94E−02

NRARP BMP4 GREB1L GREM1 SIX2

Positive regulation of exosomal secretion

2

15

1.95E−02

SDC1 SMPD3

Regulation of transcription by RNA polymerase II

30

2830

1.95E−02

DLX5 ZBTB16 BMP4 ELF3 HEYL JUP SOX11 ZC3H12A GREM1 FAM83G PITX1 NOTCH3 SMPD3 GLIS3 ID3 TBX4 CD36 CREB3L1 ROR2 ADRB2 SIX2 OVOL1 ZNF154 NRARP MAFB ZNF469 USP2 MDFI TBX1 HGF

Activation of transmembrane receptor protein tyrosine kinase activity

2

15

1.95E−02

GREM1 ADRB2

Positive regulation of macromolecule biosynthetic process

23

1978

1.96E−02

DLX5 ZBTB16 HEYL JUP SOX11 HGF BMP4 ELF3 ZC3H12A GREM1 PITX1 NOTCH3 KRT17 FGF7 CREB3L1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1

Secretion

22

1861

1.96E−02

CYP19A1 FGF7 FAM3D CHRNA4 SMPD3 CD36 IL1RN TMEM79 ZC3H12A AVPR1A SOX11 SDC1 G6PC2 ALOX12B CREB3L1 HGF GLP1R SLPI CDA S100A9 S100A12 JUP

Positive regulation of smooth muscle cell proliferation

4

101

1.97E−02

BMP4 NOTCH3 SMPD3 ALOX12

Negative regulation of hemopoiesis

5

164

2.00E−02

MAFB ZBTB16 ZC3H12A NRARP BMP4

Regulation of interleukin-6 production

5

164

2.00E−02

IL36G IL1RN ZC3H12A HGF CD36

Response to organic cyclic compound

14

975

2.02E−02

IL1RN DUOX1 HEYL JUP ANGPT2 SLC8A3 SDC1 ID3 CD36 ZC3H12A AVPR1A CLDN4 BMP4 CATSPERB

Intermediate filament cytoskeleton organization

3

51

2.02E−02

TCHH KRT17 KRT25

Negative regulation of lymphocyte differentiation

3

51

2.02E−02

ZC3H12A NRARP BMP4

Negative regulation of cell differentiation

12

774

2.08E−02

ID3 BMP4 MAFB TWIST2 NOTCH3 ZBTB16 ZC3H12A SIX2 SOX11 NRARP GREM1 TBX1

Regulation of signaling receptor activity

11

676

2.08E−02

LYNX1 HGF BMP4 NGF IL36G IL1RN FGF7 FGF18 GREM1 FAM3D ADRB2

Negative regulation of transcription by RNA polymerase II

13

876

2.08E−02

BMP4 SOX11 ZBTB16 NOTCH3 ID3 CD36 CREB3L1 HEYL OVOL1 NRARP USP2 GLIS3 MDFI

Anterior/posterior axis specification

3

52

2.10E−02

BMP4 SIX2 NRARP

Positive regulation of cell–matrix adhesion

3

52

2.10E−02

MYOC CD36 JUP

Intermediate filament-based process

3

52

2.10E−02

TCHH KRT17 KRT25

Regulation of transcription from RNA polymerase II promoter involved in heart development

2

16

2.11E−02

BMP4 GREM1

Regulation of exosomal secretion

2

16

2.11E−02

SDC1 SMPD3

Cellular response to oxygen-containing compound

16

1199

2.13E−02

IL36G IL1RN HGF ZC3H12A JUP SLC8A3 CHRNA4 SMPD3 GLP1R ID3 CD36 AVPR1A ADRB2 WNT11 TBX1 GNA15

Positive regulation of apoptotic process

11

680

2.13E−02

BMP4 ADAMTSL4 S100A9 WNT11 ALOX12 ZBTB16 ID3 ZC3H12A SIK1 PNMA5 NGF

Negative regulation of response to stimulus

21

1764

2.13E−02

SIK1 NRARP HGF MYOC ANGPT2 BMP4 KLK14 IL1RN CREB3L1 HEYL GREM1 ADRB2 AJAP1 WNT11 ALOX12 RASL11B CYP19A1 ZC3H12A ROR2 MDFI NOTCH3

Negative regulation of binding

5

168

2.13E−02

ID3 SLPI ADRB2 SOX11 MDFI

Positive regulation of macromolecule metabolic process

35

3498

2.13E−02

HGF DLX5 ZBTB16 BMP4 IL36G IL1RN HEYL JUP SOX11 FGF7 FGF18 S100A9 ELF3 ZC3H12A GREM1 ADRB2 ALOX12B CCBE1 PITX1 NOTCH3 WNT11 ALOX12 KRT17 CD36 CREB3L1 ROR2 SIX2 OVOL1 MAFB NGF SH3RF3 GLIS3 ACTG2 TBX1 S100A12

Muscle organ development

8

404

2.15E−02

BMP4 USP2 PITX1 ID3 HEYL GREM1 SOX11 TBX1

Negative regulation of DNA binding

3

53

2.16E−02

ID3 SOX11 MDFI

Mesenchyme morphogenesis

3

53

2.16E−02

WNT11 HEYL ACTG2

Regulation of phosphorylation

20

1653

2.17E−02

HGF BMP4 IL36G IL1RN MYOC FGF7 FGF18 ZC3H12A GREM1 ADRB2 ALOX12B WNT11 BDKRB1 SMPD3 CD36 ROR2 SH3RF3 TBX1 NGF S100A12

Positive regulation of programmed cell death

11

686

2.23E−02

BMP4 ADAMTSL4 S100A9 WNT11 ALOX12 ZBTB16 ID3 ZC3H12A SIK1 PNMA5 NGF

Unsaturated fatty acid biosynthetic process

3

54

2.25E−02

ALOX12 AVPR1A ALOX12B

Inner ear morphogenesis

4

107

2.25E−02

DLX5 ROR2 MAFB TBX1

Regulation of striated muscle cell differentiation

4

107

2.25E−02

GREM1 BMP4 SIK1 TBX1

Negative regulation of signal transduction

17

1321

2.27E−02

SIK1 NRARP HGF MYOC BMP4 KLK14 IL1RN CREB3L1 HEYL GREM1 ADRB2 WNT11 RASL11B ZC3H12A ROR2 MDFI NOTCH3

Lipoxygenase pathway

2

17

2.27E−02

ALOX12 ALOX12B

Interleukin-6 production

5

172

2.27E−02

IL36G IL1RN ZC3H12A HGF CD36

Linoleic acid metabolic process

2

17

2.27E−02

ALOX12 ALOX12B

Pulmonary valve morphogenesis

2

17

2.27E−02

BMP4 HEYL

Negative regulation of molecular function

16

1216

2.33E−02

ID3 HGF SLPI BMP4 ZC3H12A HEYL ADRB2 PI3 NGF SOX11 LYNX1 SPINK9 COL28A1 MDFI SIK1 LTB4R2

Positive regulation of metabolic process

37

3789

2.34E−02

HGF DLX5 ZBTB16 BMP4 IL36G IL1RN HEYL JUP SOX11 FGF7 FGF18 CREB3L1 S100A9 ELF3 ZC3H12A GREM1 ADRB2 ALOX12B CCBE1 PITX1 NOTCH3 WNT11 ALOX12 KRT17 CD36 AVPR1A ROR2 SIX2 OVOL1 MAFB NGF SH3RF3 GLIS3 ACTG2 TBX1 SMPD3 S100A12

Segmentation

4

109

2.35E−02

BMP4 ROR2 NRARP MAFB

Regulation of stress-activated MAPK cascade

6

248

2.38E−02

IL36G IL1RN ZC3H12A HGF ROR2 SH3RF3

Cell differentiation involved in kidney development

3

56

2.42E−02

BMP4 GREM1 SIX2

Regulation of epithelial cell proliferation

7

330

2.43E−02

NRARP BMP4 FGF7 DLX5 SOX11 TGM1 TBX1

Import into nucleus

5

176

2.44E−02

BMP4 ZC3H12A JUP CD36 SIX2

Regulation of stress-activated protein kinase signaling cascade

6

250

2.44E−02

IL36G IL1RN ZC3H12A HGF ROR2 SH3RF3

Positive regulation of protein metabolic process

21

1796

2.45E−02

HGF BMP4 IL36G IL1RN FGF7 FGF18 S100A9 ZC3H12A ADRB2 ALOX12B CCBE1 WNT11 ALOX12 KRT17 CD36 GREM1 ROR2 SH3RF3 TBX1 NGF S100A12

Carbohydrate derivative biosynthetic process

12

800

2.45E−02

HS3ST3A1 B3GNT4 FUT2 B3GNT8 B3GNT3 PAPSS2 CHST8 ST8SIA2 SMPD3 ST6GAL2 SDC1 CDA

Regulation of nucleocytoplasmic transport

4

111

2.46E−02

BMP4 ZC3H12A JUP CD36

Embryonic digestive tract morphogenesis

2

18

2.47E−02

SIX2 SOX11

Regulation of kidney development

3

57

2.49E−02

BMP4 GREM1 SIX2

Negative regulation of leukocyte differentiation

4

112

2.52E−02

ZC3H12A NRARP MAFB BMP4

Lung morphogenesis

3

58

2.60E−02

BMP4 FGF7 SOX11

Leukocyte chemotaxis

6

255

2.62E−02

IL36G IL1RN S100A9 CYP19A1 GREM1 S100A12

Cell junction assembly

6

255

2.62E−02

MYOC JUP WNT11 GREM1 RHOD FBLIM1

Mucopolysaccharide metabolic process

4

114

2.65E−02

HGF SMPD3 B3GNT4 B3GNT3

Regulation of growth

11

710

2.67E−02

NGF BMP4 CDA BDKRB1 KRT17 CD36 AVPR1A GREM1 ADRB2 WNT11 S100A9

Regulation of production of miRNAs involved in gene silencing by miRNA

2

19

2.68E−02

BMP4 ZC3H12A

Exosomal secretion

2

19

2.68E−02

SDC1 SMPD3

Keratinocyte migration

2

19

2.68E−02

FGF7 LTB4R2

Kidney mesenchyme development

2

19

2.68E−02

BMP4 SIX2

Negative regulation of DNA-binding transcription factor activity

5

182

2.69E−02

ID3 ZC3H12A HEYL SIK1 MDFI

Bone morphogenesis

4

115

2.69E−02

SMPD3 DLX5 BMP4 FGF18

Polysaccharide metabolic process

4

116

2.76E−02

B3GNT4 B3GNT8 B3GNT3 SMPD3

Cellular oxidant detoxification

4

117

2.83E−02

CD36 DUOX1 S100A9 GPX3

Molting cycle

4

117

2.83E−02

KRT25 KRT17 FGF7 TMEM79

Hair cycle

4

117

2.83E−02

KRT25 KRT17 FGF7 TMEM79

Extracellular exosome biogenesis

2

20

2.84E−02

SDC1 SMPD3

Positive regulation of cardiac muscle cell differentiation

2

20

2.84E−02

GREM1 BMP4

Regulation of cell growth

8

432

2.84E−02

NGF CDA BDKRB1 KRT17 AVPR1A GREM1 WNT11 S100A9

Glycoprotein metabolic process

8

432

2.84E−02

HS3ST3A1 B3GNT4 FUT2 B3GNT8 B3GNT3 CHST8 ST8SIA2 ST6GAL2

Notochord development

2

20

2.84E−02

WNT11 ID3

Blood vessel endothelial cell proliferation involved in sprouting angiogenesis

2

20

2.84E−02

NRARP BMP4

Positive regulation of stress-activated MAPK cascade

5

186

2.84E−02

IL36G IL1RN ZC3H12A ROR2 SH3RF3

Response to hydroperoxide

2

20

2.84E−02

CD36 GPX3

Middle ear morphogenesis

2

20

2.84E−02

SIX2 TBX1

Entrainment of circadian clock by photoperiod

2

20

2.84E−02

USP2 SIK1

Negative regulation of leukocyte chemotaxis

2

20

2.84E−02

CYP19A1 GREM1

Regulation of production of small RNA involved in gene silencing by RNA

2

20

2.84E−02

BMP4 ZC3H12A

Hormone secretion

7

346

2.86E−02

CYP19A1 FAM3D SMPD3 IL1RN SOX11 G6PC2 GLP1R

Positive regulation of stress-activated protein kinase signaling cascade

5

187

2.88E−02

IL36G IL1RN ZC3H12A ROR2 SH3RF3

Negative regulation of endopeptidase activity

6

264

2.89E−02

HGF PI3 SLPI SPINK9 COL28A1 NGF

Neutrophil chemotaxis

4

119

2.89E−02

IL36G IL1RN S100A9 S100A12

Embryonic digit morphogenesis

3

62

2.91E−02

ZBTB16 BMP4 ROR2

Modification of morphology or physiology of other organism

5

188

2.91E−02

SLPI S100A9 S100A12 ZC3H12A DEFB4A

Positive regulation of cell-substrate adhesion

4

120

2.95E−02

MYOC CD36 COL8A1 JUP

Positive regulation of protein serine/threonine kinase activity

7

349

2.95E−02

BMP4 FGF18 HGF ROR2 ADRB2 NGF S100A12

Regulation of cell-substrate junction assembly

3

63

3.00E−02

MYOC GREM1 RHOD

Sialylation

2

21

3.00E−02

ST8SIA2 ST6GAL2

Regulation of protein localization to nucleus

4

121

3.00E−02

BMP4 ZC3H12A JUP CD36

Protein glycosylation

6

268

3.00E−02

B3GNT4 FUT2 B3GNT8 B3GNT3 ST8SIA2 ST6GAL2

Positive regulation of Wnt signaling pathway

5

190

3.00E−02

RSPO3 NRARP JUP DLX5 ROR2

Negative regulation of chondrocyte differentiation

2

21

3.00E−02

BMP4 GREM1

Macromolecule glycosylation

6

268

3.00E−02

B3GNT4 FUT2 B3GNT8 B3GNT3 ST8SIA2 ST6GAL2

Regulation of focal adhesion assembly

3

63

3.00E−02

MYOC GREM1 RHOD

Regulation of mitochondrial depolarization

2

21

3.00E−02

MYOC ALOX12

Pulmonary valve development

2

21

3.00E−02

BMP4 HEYL

Chordate embryonic development

10

632

3.02E−02

MDFI BMP4 RSPO3 ELF3 ROR2 SIX2 SOX11 NRARP WNT11 TBX1

O-glycan processing

3

64

3.07E−02

B3GNT4 B3GNT8 B3GNT3

Respiratory gaseous exchange

3

65

3.18E−02

CHRNA4 CCBE1 MAFB

Gland morphogenesis

4

124

3.18E−02

HGF BMP4 FGF7 ELF3

Negative regulation of chemotaxis

3

65

3.18E−02

ANGPT2 CYP19A1 GREM1

Positive regulation of striated muscle cell differentiation

3

65

3.18E−02

GREM1 BMP4 TBX1

Hormone transport

7

357

3.19E−02

CYP19A1 FAM3D SMPD3 IL1RN SOX11 G6PC2 GLP1R

Extracellular vesicle biogenesis

2

22

3.21E−02

SDC1 SMPD3

Positive regulation of transcription of Notch receptor target

2

22

3.21E−02

NOTCH3 HEYL

Gastrulation

5

195

3.21E−02

BMP4 IL1RN WNT11 SIX2 COL8A1

Negative regulation of peptidase activity

6

273

3.21E−02

HGF PI3 SLPI NGF SPINK9 COL28A1

Negative regulation of response to external stimulus

7

358

3.21E−02

ANGPT2 AJAP1 HGF ALOX12 CYP19A1 ZC3H12A GREM1

Proteolysis

22

1988

3.24E−02

CPXM2 HGF USP2 KLK14 S100A9 ZC3H12A CCBE1 KLK12 PRSS50 ALOX12 PI3 SLPI KLK10 NGF ADAMTSL4 PRSS35 ADAMTS15 KLK13 PRSS27 SPINK9 COL28A1 ADRB2

Negative regulation of cell-substrate adhesion

3

66

3.25E−02

MYOC AJAP1 ANGPT2

Transcription by RNA polymerase II

30

2992

3.25E−02

DLX5 ZBTB16 BMP4 ELF3 HEYL JUP SOX11 ZC3H12A GREM1 FAM83G PITX1 NOTCH3 SMPD3 GLIS3 ID3 TBX4 CD36 CREB3L1 ROR2 ADRB2 SIX2 OVOL1 ZNF154 NRARP MAFB ZNF469 USP2 MDFI TBX1 HGF

Regulation of phosphate metabolic process

21

1870

3.25E−02

HGF BMP4 IL36G IL1RN MYOC FGF7 FGF18 CDA ZC3H12A GREM1 ADRB2 ALOX12B WNT11 BDKRB1 SMPD3 CD36 ROR2 SH3RF3 TBX1 NGF S100A12

Regulation of membrane potential

8

450

3.25E−02

CHRNA4 KCNK12 MYOC SLC8A3 ALOX12 CD36 ADRB2 JUP

Positive regulation of MAP kinase activity

6

275

3.25E−02

BMP4 FGF18 HGF ROR2 NGF S100A12

Cellular detoxification

4

126

3.26E−02

CD36 DUOX1 S100A9 GPX3

Carbohydrate metabolic process

10

644

3.27E−02

G6PC2 B3GNT4 B3GNT8 B3GNT3 ST8SIA2 ST6GAL2 SMPD3 CHST8 FUT2 SIK1

Positive regulation of nucleobase-containing compound metabolic process

22

1993

3.27E−02

DLX5 ZBTB16 HEYL JUP SOX11 HGF BMP4 ELF3 ZC3H12A GREM1 PITX1 NOTCH3 FGF7 CREB3L1 ROR2 ADRB2 SIX2 OVOL1 MAFB WNT11 GLIS3 TBX1

Regulation of phosphorus metabolic process

21

1872

3.27E−02

HGF BMP4 IL36G IL1RN MYOC FGF7 FGF18 CDA ZC3H12A GREM1 ADRB2 ALOX12B WNT11 BDKRB1 SMPD3 CD36 ROR2 SH3RF3 TBX1 NGF S100A12

Protein localization to nucleus

6

276

3.27E−02

BMP4 ZC3H12A JUP ZBTB16 CD36 SIX2

Cofactor catabolic process

3

67

3.31E−02

GPX3 DUOX1 ALDH1L1

Male genitalia development

2

23

3.35E−02

GREB1L ROR2

Lens morphogenesis in camera-type eye

2

23

3.35E−02

BMP4 SOX11

Positive regulation of epidermal cell differentiation

2

23

3.35E−02

BMP4 SULT2B1

Negative regulation of muscle contraction

2

23

3.35E−02

ADRB2 ZC3H12A

Branching involved in salivary gland morphogenesis

2

23

3.35E−02

HGF FGF7

Endothelial tube morphogenesis

2

23

3.35E−02

BMP4 ALOX12

Morphogenesis of an endothelium

2

23

3.35E−02

BMP4 ALOX12

Cranial skeletal system development

3

68

3.39E−02

BMP4 SIX2 TBX1

Inflammatory response

12

856

3.39E−02

BDKRB1 LTB4R2 S100A9 HGF SDC1 IL36G IL1RN CYP19A1 S100A12 ELF3 ZC3H12A CD36

Negative regulation of cell–cell adhesion

5

200

3.39E−02

IL1RN ALOX12 ZC3H12A NRARP BMP4

Glycosylation

6

280

3.41E−02

B3GNT4 FUT2 B3GNT8 B3GNT3 ST8SIA2 ST6GAL2

Embryo development ending in birth or egg hatching

10

652

3.44E−02

MDFI BMP4 RSPO3 ELF3 ROR2 SIX2 SOX11 NRARP WNT11 TBX1

Regulation of adherens junction organization

3

69

3.48E−02

MYOC GREM1 RHOD

Skeletal muscle cell differentiation

3

69

3.48E−02

HEYL SOX11 TBX1

Ceramide biosynthetic process

3

69

3.48E−02

ST8SIA2 ALOX12B SMPD3

Response to toxic substance

9

555

3.49E−02

CHRNA4 HGF SMPD3 SDC1 CD36 DUOX1 S100A9 ZC3H12A GPX3

Photoperiodism

2

24

3.51E−02

USP2 SIK1

Positive regulation of lipid storage

2

24

3.51E−02

ZC3H12A CD36

Purine ribonucleoside bisphosphate metabolic process

2

24

3.51E−02

PAPSS2 SULT2B1

Myelination

4

131

3.51E−02

MALL HGF MYOC SLC8A3

Positive regulation of protein kinase activity

9

557

3.51E−02

BMP4 FGF18 HGF WNT11 GREM1 ROR2 ADRB2 NGF S100A12

3 -phosphoadenosine 5 -phosphosulfate metabolic process

2

24

3.51E−02

PAPSS2 SULT2B1

Mitochondrial depolarization

2

24

3.51E−02

MYOC ALOX12

Uterus development

2

24

3.51E−02

CYP19A1 GREB1L

Regulation of cellular protein metabolic process

28

2768

3.54E−02

HGF BMP4 IL36G IL1RN MYOC FGF7 FGF18 S100A9 ZC3H12A GREM1 ADRB2 ALOX12B CCBE1 WNT11 BDKRB1 SMPD3 ALOX12 PI3 SLPI KRT17 NGF CD36 ROR2 SPINK9 COL28A1 SH3RF3 TBX1 S100A12

Formation of primary germ layer

4

132

3.56E−02

BMP4 WNT11 SIX2 COL8A1

Endocrine system development

4

132

3.56E−02

BMP4 PITX1 WNT11 TBX1

Regulation of DNA binding

4

132

3.56E−02

ID3 SOX11 MDFI NGF

Striated muscle cell differentiation

6

285

3.56E−02

BMP4 AVPR1A GREM1 SDC1 SIK1 TBX1

Inner ear development

5

205

3.59E−02

DLX5 BMP4 ROR2 MAFB TBX1

Neutrophil migration

4

133

3.62E−02

IL36G IL1RN S100A9 S100A12