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Table 2 PCR array data showing the differential expression of cell death pathway genes in IFA aloned and MOG + IFA immunised animals injected with cytokine viral vectors compared to GFP vector injected control animals at 28 days post injection. Genes highlighted in bold and italics showed a greater than 2-fold significant increase

From: Persistent elevation of intrathecal pro-inflammatory cytokines leads to multiple sclerosis-like cortical demyelination and neurodegeneration

Gene

Fold change (compared to GFP control)

MOG

IFA

Fold Change

95% Cl

p-value

Fold Change

95% Cl

p-value

Aifm1

1.78

(1.28, 2.28)

0.017

2.28

(1.45, 3.10)

0.033

Ar

3.32

(1.47, 5.18)

0.026

3.97

(2.09, 5.85)

0.008

Atp6v1g2

2.32

(1.19, 3.45)

0.035

2.81

(1.92, 3.71)

0.002

Bax

1.45

(0.95, 1.96)

0.091

1.53

(1.02, 2.04)

0.054

Bid

1.94

(0.94, 2.95)

0.118

1.93

(1.53, 2.33)

0.002

Birc3

4.33

(2.12, 6.54)

0.034

4.86

(3.48, 6.23)3.48, 6.23)(1.47, 2.62)

0.0001

Bmf

2.23

(0.87, 3.59)

0.115

2.05

(1.47, 2.62)

0.003

Capn2

2.00

(1.31, 2.69)

0.053

2.29

(1.52, 3.05)

0.013

Capn3

2.80

(1.53, 4.06)

0.042

2.20

(1.42, 2.98)

0.007

Capn5

1.97

(1.66, 2.29)

0.001

1.97

(1.53, 2.41)

0.005

Capn7

1.80

(1.04, 2.55)

0.068

2.07

(1.57, 2.57)

0.003

Capns1

2.53

(1.44, 3.63)

0.037

2.81

(1.69, 3.92)

0.021

Cd40

4.78

(2.30, 7.25)

0.047

3.91

(2.59, 5.23)

0.002

Cetn1

2.36

(1.14, 3.59)

0.033

2.09

(1.04, 3.14)

0.049

Cyba

5.43

(2.06, 8.79)

0.107

4.05

(3.39, 4.71)

0.0001

Cybb

17.03

(3.33, 30.73)

0.059

11.17

(5.71, 16.64)

0.003

Cyld

3.00

(2.06, 3.93)

0.007

2.23

(1.06, 3.39)

0.070

Defb1

5.87

(3.01, 8.73)

0.015

3.12

(0.27, 5.97)

0.192

Dpys14

1.79

(1.32, 2.26)

0.014

2.08

(1.37, 2.79)

0.027

Fadd

1.71

(1.06, 2.35)

0.041

2.14

(1.19, 3.09)

0.066

Fas

3.49

(1.45, 5.54)

0.107

2.24

(1.77, 2.71)

0.001

Faslg

1.61

(0.88, 2.34)

0.167

2.10

(1.38, 2.81)

0.014

Foxi1

22.90

(0.00001, 65.05)

0.091

23.61

(0.00001, 72.42)

0.323

Glud1

2.06

(1.35, 2.78)

0.052

2.14

(1.36, 2.93)

0.021

Glul

2.29

(1.39, 3.18)

0.021

2.50

(0.95, 4.06)

0.088

Grb2

2.65

(1.95, 3.34)

0.004

2.69

(1.83, 3.55)

0.007

Hspbap1

2.08

(1.62, 2.55)

0.005

2.22

(1.45, 2.98)

0.022

Kcnip1

1.77

(1.03, 2.51)

0.050

2.40

(1.43, 3.36)

0.019

Madd

1.63

(1.03, 2.22)

0.046

2.27

(1.45, 3.10)

0.022

Myd88

2.91

(1.56, 4.27)

0.088

2.52

(1.99, 3.04)

0.001

Nfkb1

2.34

(1.69, 3.00)

0.004

2.24

(1.53, 2.95)

0.007

Ngf

2.04

(1.36, 2.27)

0.008

2.37

(1.39, 3.35)

0.012

Ngfr

3.32

(1.68, 4.96)

0.024

2.59

(1.28, 3.90)

0.031

Nox1

3.44

(1.77, 5.11)

0.008

4.23

(2.53, 5.94)

0.001

Parp1

1.85

(1.06, 2.64)

0.078

1.98

(1.48, 2.48)

0.004

Parp2

1.25

(0.90, 1.60)

0.200

1.36

(1.15, 1.57)

0.008

Ppid

2.09

(1.38, 2.80)

0.036

2.23

(1.59, 2.87)

0.005

Pygl

4.06

(1.84, 6.28)

0.048

3.31

(1.83, 4.79)

0.010

Rab25

2.55

(1.27, 3.83)

0.027

2.42

(1.45, 3.38)

0.005

Dennd4a

1.96

(1.25, 2.67)

0.041

2.13

(1.57, 2.70)

0.003

Ripk1

1.80

(1.29, 2.31)

0.022

1.94

(1.26, 2.62)

0.027

Ripk2

1.64

(1.17, 2.10)

0.056

1.88

(1.43, 2.34)

0.010

Ripk3

4.16

(1.83, 6.48)

0.049

2.71

(2.00, 3.42)

0.0001

Sp1

1.92

(1.31, 2.53)

0.036

2.03

(1.46, 2.61)

0.012

Spata2

2.36

(1.89, 2.82)

0.0001

2.66

(1.44, 3.88)

0.038

Tmem123

2.85

(1.60, 4.11)

0.065

2.36

(1.98, 2.75)

0.000

Tmem57

2.63

(1.12, 4.14)

0.055

2.04

(1.11, 2.97)

0.018

Tnf

4.81

(1.92, 7.71)

0.049

3.38

(1.69, 5.06)

0.039

Tnfrsf10b

2.19

(1.09, 3.29)

0.037

2.23

(1.32, 3.14)

0.003

Tnfrsf14

51.83

(0.00001, 120.6)

0.028

34.17

(0.00001, 79.86)

0.030

Tnfrsf17

2.10

(1.74, 2.47)

0.001

2.15

(1.58, 2.73)

0.013

Tnfrsf1a

2.62

(1.80, 3.44)

0.018

2.21

(1.55, 2.86)

0.009

Tnfrsf1b

6.02

(3.58, 8.46)

0.014

4.12

(3.36, 4.89)

0.0001

Tnfrsf25

1.91

(1.01, 2.80)

0.023

2.26

(0.78, 3.74)

0.130

Tnfrsf8

4.24

(2.84, 5.63)

0.003

4.14

(3.14, 5.15)

0.0001

Tnfrsf10

2.63

(1.57, 3.70)

0.029

2.59

(1.82, 3.37)

0.001

Tradd

2.11

(1.71, 2.52)

0.002

2.10

(1.46, 2.74)

0.014

Traf2

2.30

(1.60, 2.99)

0.020

2.38

(1.64, 3.11)

0.009

Txnl4b

2.91

(1.49, 4.32)

0.114

2.23

(1.62, 2.84)

0.005