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Table 4 List of Oligonucleotide Sequences

From: DNA damage accumulates and responses are engaged in human ALS brain and spinal motor neurons and DNA repair is activatable in iPSC-derived motor neurons with SOD1 mutations

ID

Sequence (5’-3’)

Purpose

SOD1-G93A-gRNA-fwd

TAATACGACTCACTATAGGAATCTTCAATAGACACA

gRNA DNA template for gRNA synthesis

SOD1-G93A-gRNA-rev

TTCTAGCTCTAAAACATGTGTCTATTGAAGATTC

SOD1-G93A-ssODN

p-ZOCATCTGATGCTTTTTCATTATTAGGCATGTTGGAGAC

TTGGGCAATGTGACTGCTGACAAAGATGCTGTGGCAGAT

GTGTCTATTGAAGATTCZET

knock-in donor DNA

OT1-fwd

AGACACTGGCATTTCAGACGTAGG

Off-target analysis

OT1-rev

AGAAGACCCATGATTCCTGGGC

OT2-fwd

CAAAGGTAGATCGCCAGAGACAAC

OT2-rev

TGCCTGGTGGGAAGGTCCAT

OT3-fwd

CAACCGGAGAAGTGACAAGGC

OT3-rev

CTCAGATCAGTCTCTAGCAATCCC

OT4-fwd

TCTGTAGTCAGCCTCTGTCCAC

OT4-rev

CTTTCTGGGTCCCCAGTTTCTAC

OT5-fwd

GGGCCTATGGAAGTGAACTCAAC

OT5-rev

ATGTTGCATGTTTCTATGATGGGCCTATCC

OT6-fwd

TCCTGGATGGTCCTGGACATCA

OT6-rev

AGCAATGTGTGTCACTCCAGGATC

OT7-fwd

GCAAATAAGCAACAGACCGAGGAG

OT7-rev

GCCTCAGCTTTCTCATGTACCATC

  1. * p: 5’-phosphate, O: Phosphorothioate-C, E: Phosphorothioate-G, Z: Phosphorothioate-T