Skip to main content

Table 2 Differential Expression (All Groups)

From: Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriers

Order

With Cell-Type-Specific Markers

Without Cell-Type-Specific Markers

Gene

Chr

P-value

FDR

Gene

Chr

P-value

FDR

1

C9orf72

chr9

5.86E-19

1.41E-14

C9orf72

chr9

3.61E-12

8.69E-08

2

SMIM14

chr4

2.06E-11

2.49E-07

RP11-196E1.3

chr11

3.89E-11

4.68E-07

3

FBLL1

chr5

1.12E-10

8.96E-07

GEM

chr8

3.45E-10

2.05E-06

4

ABCE1

chr4

3.54E-10

2.13E-06

PCP4

chr21

3.47E-10

2.05E-06

5

HRH3

chr20

9.60E-10

4.62E-06

KCNC3

chr19

5.85E-10

2.05E-06

6

GIT1

chr17

1.41E-09

5.55E-06

ANGPT1

chr8

6.33E-10

2.05E-06

7

AC009133.15

chr16

1.61E-09

5.55E-06

SMIM14

chr4

6.85E-10

2.05E-06

8

PYCR2

chr1

2.33E-09

6.24E-06

GPCPD1

chr20

7.04E-10

2.05E-06

9

VSTM2A-OT1

chr7

2.52E-09

6.24E-06

KREMEN2

chr16

8.08E-10

2.05E-06

10

MTR

chr1

2.59E-09

6.24E-06

DPYSL3

chr5

8.49E-10

2.05E-06

11

KCNJ6

chr21

3.06E-09

6.26E-06

SCN1B

chr19

9.75E-10

2.14E-06

12

RP11-196E1.3

chr11

3.26E-09

6.26E-06

PRELP

chr1

1.38E-09

2.78E-06

13

TESK1

chr9

3.98E-09

6.26E-06

FBLL1

chr5

1.58E-09

2.93E-06

14

DCAF16

chr4

4.07E-09

6.26E-06

LINC01102

chr2

1.95E-09

3.17E-06

15

SH3GL1P3

chr17

5.26E-09

6.26E-06

CTD-2126E3.4

chr19

1.98E-09

3.17E-06

16

DCTN6

chr8

5.26E-09

6.26E-06

SLC17A6

chr11

2.10E-09

3.17E-06

17

BPGM

chr7

5.57E-09

6.26E-06

RAB4B

chr19

2.23E-09

3.17E-06

18

NT5DC1

chr6

5.58E-09

6.26E-06

KB-1107E3.1

chr8

3.56E-09

4.77E-06

19

RP11-318A15.7

chr17

5.59E-09

6.26E-06

CCDC102A

chr16

4.10E-09

5.19E-06

20

CHMP2B

chr3

5.69E-09

6.26E-06

AEBP1

chr7

4.62E-09

5.39E-06

  1. Differentially expressed genes are displayed either with or without adjustment for cell-type-specific markers. For each gene, the chromosome (Chr), p-value, and false discovery rate (FDR) are included