CSF Presenilin-1 complexes are increased in Alzheimer’s disease
© García-Ayllón et al.; licensee BioMed Central Ltd. 2013
Received: 3 August 2013
Accepted: 4 August 2013
Published: 6 August 2013
Presenilin-1 (PS1) is the active component of the amyloid precursor protein cleaving γ-secretase complex. PS1 protein is a transmembrane protein containing multiple hydrophobic regions which presence in cerebrospinal fluid (CSF) has not been measured to date. This study assesses whether PS1 and other components of the γ-secretase complex are present in CSF.
Here, we show that PS1 is present in ventricular post-mortem and lumbar ante-mortem CSF, and plasma as 100–150-kDa hetero-complexes containing both the N- and C-terminal fragments (NTF and CTF) of the protein. Immunoprecipitation and immunoblotting with different antibodies confirmed the identity of the PS1 species. The γ-secretase components, APH-1 (anterior pharynx-defective 1) and PEN-2 (presenilin enhancer 2), as well as presenilin-2 (PS2) fragments, co-exist within these CSF complexes, while nicastrin is not detected. These CSF-PS1 complexes differ from active γ-secretase membrane-complexes, and may represent nonspecific aggregation of the PS1 protein. Levels of PS1 complexes are increased in CSF samples from autopsy-confirmed Alzheimer’s disease (AD) cases and were found to be more stable than complexes in CSF from control subjects. Despite similar levels of total PS1 in CSF from probable AD patients and cognitively normal subjects, an increased proportion of highly stable PS1 complexes were observed in AD CSF.
Our data suggest that fragments of the PS1 protein present in CSF as complexes may be useful as a biomarker for AD.
KeywordsAlzheimer’s disease Cerebrospinal fluid Diagnostic Biomarker Presenilin 1
The major pathological hallmarks of Alzheimer’s disease (AD), the β-amyloid peptide (Aβ) and the abnormally hyperphosphorylated protein tau (P-tau), are also recognized biomarkers which have been extensively investigated (for a review see ). However, there is a continuing search for new cerebrospinal fluid (CSF) biomarkers for use in clinical diagnosis, especially for the early stages of AD, and for use in clinical trials.
Other logical AD biomarker candidates are proteins involved in the pathological processing of the large transmembrane protein, the amyloid precursor protein (APP), leading to β-amyloid formation in the AD brain. The Aβ polypeptide is generated by processing of APP, through the successive action of two proteolytic enzymes, β-secretase and γ-secretase . The major neuronal β-secretase has been identified as beta-site APP cleaving enzyme 1 (BACE1; ). As BACE1 contains a single transmembrane domain, its presence in CSF is not unexpected . In contrast, γ-secretase consists of four essential subunits: presenilin-1 (or presenilin-2), nicastrin, APH-1 (anterior pharynx-defective 1), and PEN-2 (presenilin enhancer 2) . Presenilin-1 (PS1), a transmembrane aspartyl protease, is the catalytic subunit, and has a nine-transmembrane domain topology . A close homologue of PS1, presenilin-2 (PS2), shares a high degree of homology with the PS1 protein, has functional redundancy and also contains the active site of γ-secretase, forming similar but independent complexes .
To our knowledge, the presence of presenilins in CSF has not been reported to date. In this study we investigated if PS1 is detectable in CSF and if altered levels of this protein reflect the pathological condition.
PS1 NTF and CTF are present in high molecular mass complexes in CSF and plasma
Difference in assay conditions, such as the presence of detergents, can affect the molecular interactions necessary for PS1 complex formation and its subsequent detection . PS1 aggregates have previously been described as temperature-sensitive . As the denaturation temperature prior to electrophoresis is not standardized, we determined the effect of sample heating during preparation on the stability of high molecular mass PS1 complexes. The high temperature used during sample preparation for electrophoresis (98°C compared with 50°C), resulted in an overall loss of PS1 immunoreactivity, the higher molecular mass complexes being the most severely affected (Figure 1C). These experiments demonstrate that different assay methods and sample handling may influence the stability and detection of PS1 complexes. Studies performed with samples denatured at 98°C can therefore underestimate and fail to detect PS1 complexes. In this study, all analyses performed on PS1 avoided freeze-thaw cycles and denaturation before electrophoresis was conducted at 50°C.
Interestingly, under the conditions used for PS1 complex detection, PEN-2 and APH-1 immunoreactivities in CSF displayed similar electrophoretic banding patterns. However the traces of nicastrin that were detected were not part of the high molecular mass presenilin complexes (Figure 1D). Nicastrin was only reliably detected when sample preparation for electrophoresis was performed at 98°C (Figure 1E).
The other known subunits of the γ-secretase complex, APH-1 and PEN-2, were detected in freshly collected lumbar samples immunoprecipitated with an alternative PS1-NTF antibody, indicating that these components are part of the complexes (Figure 2D). These PS1 complexes from both post mortem and freshly collected lumbar CSF also contain PS2 fragments, demonstrating the existence of mixed complexes of PS1 and PS2 in the CSF (Figure 2A, 2D).
Previous studies have also utilized gradient centrifugation to characterize PS1 complexes . PS1 complexes were further characterized in lumbar CSF samples and dodecylmaltoside-solubilized brain membrane fractions by fractionation on sucrose density gradients containing the detergent Brij 97 (Figure 3B).
The majority of the PS1 solubilized from human brain in presence of dodecylmaltoside accumulated close to the alkaline phosphatase marker (molecular mass ~140-160 kDa), and were resolved as a 29-kDa band by Western blotting using an NTF-PS1 antibody under denaturing conditions. Brain-PS1 complexes were also identified in denser fractions, close to the sedimentation rate of catalase (molecular mass ~232 kDa). Interestingly, these large PS1 complexes were resolved as ~50-kDa heterodimers. However, CSF-PS1 complexes which sediment close to alkaline phosphatase were resolved as stable 100-150 kDa complexes, instead of monomeric NTF-PS1 (Figure 3B). Large CSF-PS1 complexes were also resolved as ~50-kDa heterodimers, indicating that these complexes are less stable in the CSF than those which sediment at 100-150 kDa. APH-1 and PEN-2 were again identified as components of the CSF-PS1 complexes (Figure 3C).
No measurable γ-secretase activity  was detected in freshly collected lumbar CSF samples from non-demented subjects (n = 5). These results indicate that CSF-PS1 complexes differ from the active γ-secretase complexes found in the brain, and may represent nonspecific aggregation of PS1 fragments (together with APH-1 and PEN-2, but not nicastrin) in the CSF.
PS1 levels are increased in AD ventricular post-mortem CSF
Fractionation on sucrose density gradients followed by Western blotting under denaturing conditions revealed that the highly stable 100-150 kDa complexes were more abundant in AD samples, while less stable complexes that sediment in denser fractions were mostly detected in NDC samples. This difference enabled us to define a quotient between highly stable complexes (represented by 100–150-kDa heterodimers which sediment closer to alkaline phosphatase) and unstable complexes (50-kDa complexes which sediment closer to catalase), allowing us to fully discriminate between the two groups (Figure 5C).
Highly stable PS1 complexes are increased in AD lumbar ante-mortem CSF
Levels of full-length BACE1 in CSF
To our knowledge, the possibility that PS1 can be assessed in the CSF has thus far not been considered. Here, we demonstrate that heterodimeric complexes composed of NTF and CTF PS1 are detectable in CSF. To date, the presence of soluble CTF-PS1 has only been demonstrated in culture medium of primary neurons and HEK cells .
The majority of mature brain PS1 protein is present as proteolytic NTF- and CTF-PS1 fragments . The existence of 100–150-kDa complexes containing both endogenous NTF and CTF-PS1 has only previously been described in cultured cells . PS1 exhibiting higher molecular mass bands in SDS-PAGE, has also been described in cellular models over-expressing the protein [24, 25]. These high molecular mass bands of PS1 were detected by alternative anti-NTF and CTF-PS1 antibodies, confirming that heterodimers contain both PS1 fragments. Triton X-100, a common detergent frequently used to extract and solubilise membrane bound proteins, disassembles the 100–150-kDa complexes , and these PS1 heterodimeric species have therefore been mischaracterized in the many previous studies. The sensitivity of these complexes to high temperatures during sample preparation may contribute to its mischaracterization. The presence of the minor 29-kDa NTF and 20-kDa CTF species was only clearly detectable in post-mortem CSF, where artefacts are likely to appear. Similarly, the 50-kDa species was only resolved as a major PS1 band in immunoprecipitates after elution at acid pH.
Ultracentrifugation in sucrose density gradients containing the detergent Brij 97 confirms the existence of stable complexes of 100–150-kDa, and also of large complexes which sediment in regions closer to 200 and 250 kDa. These large complexes are unstable and resolve as 50-kDa components during electrophoresis under denaturing conditions.
γ-Secretase exists on the plasma membrane as an intact complex composed of its subunit components [15, 26], at a stoichiometry of presenilin:PEN-2:nicastrin:APH-1, 1:1:1:1 . However, PS1 can associate intra-molecularly to form higher order complexes , where nicastrin, APH-1 and PEN-2 do not seem to be required for its hetero- and homodimerization . Interestingly, our studies have identified APH-1 and PEN-2, but not nicastrin in the PS1-complexes. γ-Secretase activity depends on the presence of all four components of the complex, including nicastrin [30, 31]. As we were unable to detect γ-secretase activity in human CSF, PS1 complexes in CSF are therefore likely to be the result of nonspecific aggregation of the protein. PS1-CSF complexes appeared as a smear (from ~200 to 1000 kDa) and not as defined complexes on blue native-PAGE. PS2 has been shown to form similar but independent γ-secretase complexes in cell membranes, and PS2 does not co-precipitate with PS1 fragments in membrane extracts [7, 32]. We were able to demonstrate that fragments of PS2 are bound to the same PS1 complexes in CSF. As presenilins are proteins with large numbers of hydrophobic regions, presenilin fragments may be highly unstable in CSF, and spontaneously form complexes. Indeed, like many membrane proteins, PS1 has exhibited a tendency to aggregate under non-native conditions [11, 12]. Thus, in normal conditions, the amount of free CTF and NTF in CSF should be very low as PS1 predominantly exists as complexes. Preliminary analysis indicates that PS1 complexes do not contain some of the abundant CSF proteins known to bind hydrophobic proteins (e.g., albumin). Further characterization of these complexes is yet to be conducted. The possibility that other proteins, such as Aβ, may also be part of the PS1 complex needs to be addressed. Similarly, the source and mechanism of how PS1 appears in CSF is yet to be determined. Active secretion is unlikely, and it is still unclear if passive release from brain cells or neuronal death may be major contributing factors, as recently observed for BACE1 .
Stable 100–150-kDa complexes are more abundant in AD CSF, and this may reflect differences in the hydrophobic and ionic properties of PS1 complexes formed under amyloidogenic conditions. In this context, it is also remarkable that the 29-kDa NTF, detectable only in post-mortem CSF, is less abundant in AD samples, indicating that complexes formed under amyloidogenic conditions are particularly stable. Whether PS1 complexes differ between AD and non-demented subjects requires further research.
It is likely that molecular aberrations in the AD brain are reflected in the CSF. Although it cannot be excluded that the accumulation of Aβ in AD may be partly due to deficient clearance of the peptide, an increase in the generation of Aβ is plausible. Thus, an increase in activity and/or levels of β- and γ-secretase protein components should be expected. These catalytic effectors of β- and γ-secretase are key enzymes in pathological amyloid processing and the subsequent generation of Aβ constitutes a central event in AD progression. However, it is still unclear if γ-secretase activity is altered. Reported levels of PS1 in AD brains have been contradictory. Reports have displayed an increase [34, 35], unchanged levels  or even a decrease [37, 38] in levels, compared to levels in non-demented brains. At the transcriptional level, early reports indicate no differences between PS1 mRNA levels in AD brain compared to controls . However subsequent research suggests that PS1 mRNA levels in human AD brains are significantly higher than in those with no dementia [34, 40]. Interestingly, we have shown that Aβ peptide treatment of cultured cells is able to induce increases in cellular PS1 levels , probably as part of a vicious cycle of Aβ generation.
In our analysis, ventricular post-mortem samples display large differences in the level of PS1 and the stability of its complexes. Lumbar CSF samples only display differences in PS1 complex stability as resolved by sucrose density gradients. Thus, despite high levels of PS1 correlating with an increased proportion of stable complexes in post-mortem CSF, results in lumbar CSF suggest that the early and more significant phenomenon is the change in the dynamics of the assembly of PS1 complexes, a change that appears to be a better marker for discriminating between pathological samples than total PS1 protein levels alone. In any case, the comparison between the two different sets of CSF samples is difficult, as the potential existence of artefacts in the post-mortem samples and the possibility that ventricular and lumbar CSF samples may differently reflect brain protein content. Moreover, our collection of lumbar CSF samples display clear differences for classical AD biomarkers, but the inherent uncertainty in clinical diagnosis should indeed be considered. Although, the more obvious difference between the CSF collections is that post-mortem CSF reflects late stages of the disease, whereas lumbar CSF corresponds to earlier stages of disease in patients. Nonetheless, CSF PS1, combined with other biomarkers, may constitute a potential new marker for AD. Furthermore, CSF PS1 may have value as a marker of disease progression or for monitoring treatment.
As there is still a lack of reliable blood biomarkers for neurodegenerative disorders, it is important to assess if levels in plasma of new potential biomarkers correlate with AD. PS1 is expressed in many peripheral organs as well as the brain [42, 43]. The presence of PS1 complexes in the serum of PS1 cKO mice, in which PS1 is specifically absent in neurons of the forebrain, while mostly absent in CSF, suggests that plasma and CSF PS1 may have distinct cellular origins. Although a small contribution of brain PS1 to plasma levels cannot be discounted, our results indicate that PS1 detection in plasma will not be an efficient marker for brain disorders.
In conclusion, accurate diagnosis of AD during life is essential. Numerous laboratories have reported an increase in levels of T-tau and P-tau in CSF, but tau is also increased as result of other neurological processes. While levels of the pathological Aβ42 species are also increased in the AD brain, the levels in CSF are decreased due to increasing deposition . These biomarkers have shown diagnostic accuracy for incipient AD , however, there is still a need to identify additional specific biochemical markers of AD. Proteins involved in the pathological processing of amyloid are potential candidates. In this study we demonstrate that CSF PS1 has potential as a new biomarker. The diagnostic value of CSF PS1 in the early stages of AD and in other dementias requires further study. In addition, biomarkers are also important to evaluate drug effects underlying pathophysiology of the disease . One of the promising AD drugs under development are γ-secretase inhibitors [46, 47]. Estimation of PS1 CSF levels may therefore be useful to challenge the disease-modifying effects of newer Alzheimer’s therapy.
Patients, PS1 conditional knockout mice and PS1 over-expressing cells
Ventricular CSF was obtained post-mortem at the Banco de Tejidos, Fundación CIEN (Madrid, Spain), Fundación Hospital de Alcorcón (Madrid, Spain) and Fundación AlzheimUr (Murcia, Spain). Samples contaminated with blood were excluded from analysis. CSF was centrifuged at 1000 × g for 15 min to eliminate cells and insoluble material prior to biochemical analyses. AD cases [n = 10 (5 female and 5 male); mean age ± standard error of mean (SEM); 77 ± 2 years] were selected based on clinical history of dementia and neuropathological CERAD diagnosis . Samples from age-matched non-demented control (NDC) cases had no clinical or pathological features of dementia [n = 7 (2 female and 5 male); 72 ± 3 years]. Only samples with a post-mortem interval lower than 14 hr were included, with no differences between groups.
Microsomal membranes were solubilized from 0.2 g of human frontal cortex (two NDC cases from Banco de Tejidos, Fundación CIEN) in buffer containing 0.5% dodecylmaltoside, 20% glycerol, and 25 mM Bis-Tris/HCl, pH 7.0, as previously described . γ-Secretase complexes extracted from membrane preparations were analyzed by blue native-PAGE.
Lumbar CSF samples were obtained from 12 patients (5 men and 7 women, 71 ± 5 years) with mild-moderate AD, and 12 healthy volunteers (5 men and 7 women, 66 ± 9 years) from Huddinge University Hospital (Stockholm, Sweden). All AD patients fulfilled the NINCDS-ADRDA criteria for “probable” AD . Controls had no history or symptoms of neurological or psychiatric disorders, or memory complaints, and had an MMSE score of 28 or higher. Five non-demented control CSF samples (2 men and 3 women, 52 ± 7 years) obtained from the Hospital General Universitario de Elche (Elche, Spain) were analytically processed within 24-48 hours of collection to avoid freezing and thawing of the samples.
Plasma samples from five healthy volunteers (76 ± 1 years) were collected in heparinized tubes at the Hospital General Universitario de Elche and separated from whole blood by centrifugation at 3000 × g for 15 min at 4°C. CSF and plasma samples were aliquoted and frozen at -80°C until use.
Material collected from animals
CSF and plasma samples were also collected from four 3 month-old PS1conditional knockout mice (PS1 cKO) and five littermates in a C57BL6/129 hybrid background. In these cKO mice, PS1 expression has been selectively eliminated in glutamatergic neurons from the postnatal forebrain at P18, and at 2–3 months of age revealed no detectable brain PS1 . CSF (4-6 μL) was obtained by cisternal puncture with a needle inserted in the suboccipital region through the atlanto-occipital membrane, with a single incision of the subarachnoid space as previously described . Blood was withdrawn (0.2 mL) by cardiac puncture with heparinized needles and syringes. CSF and plasma samples were centrifuged at 1000 × g for 10 min at 4˚C and the supernatants stored at -80°C until further analysis.
Material collected from cells
SH-SY5Y cells (800,000 cells/well) were grown in 6 well plates and transfected with a construct encoding full-length PS1  (or with the expression plasmid pcDNA3 (Invitrogen), using Lipofectamine 2000® (Invitrogen) according to the manufacturer’s instructions.
Western blotting and immunoprecipitation
CSF samples (30-40 μL from human subjects; pooled volume of 15 μL from 3 mice), or plasma samples (0.5 μL) were denatured at 50°C for 15 min or alternatively at 98°C for 5 min for other analyses. For BACE1 analysis CSF samples were denatured always at 98°C for 5 min. Samples were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) under fully reducing conditions. For blue-native gel electrophoresis, samples were analyzed as previously described  and NativeMark™ Unstained Protein Standards (Life Techologies) were used for molecular weight markers. Alternatively, human plasma samples were first depleted of highly abundant proteins using immunoaffinity-based chromatography (Seppro® IgY14 spin column kit, GenWay Biotech Inc) prior to gel electrophoresis (25 μg of protein after protein depletion). The separated proteins were transferred to nitrocellulose membranes (Schleicher and Schuell Bioscience GmbH) and probed with PS1 antibodies to N-terminal amino acids 1-65 (Calbiochem), amino acids 21-34 (from Thermo Scientific), amino acids 1-20 (antibody 98/1, ); amino acids 303-316 in the loop region of the C-terminal (Sigma), or to amino acids 301-317 in the loop region of human PS1(antibody 00/2; ). CSF proteins were also probed for PS2 using the polyclonal rabbit antibody “00/12,” raised to residues 307–336 of the human PS2 loop domain . BACE1 antibody was from Cell Signaling, nicastrin antibody was from Millipore, APH-1, PEN-2 and albumin antibodies were from Sigma. Individual blots were used for the different antibodies, to eliminate antibody cross-reactivity. Blots were incubated with the corresponding secondary antibody conjugated to horseradish peroxidase and the signal was detected using ECL Plus detection reagent according to the manufacturer’s instructions (GE Healthcare) in a Luminescent Image Analyzer LAS-1000 Plus (FUJIFILM). A control CSF sample was used to normalize the immunoreactive signal. For semi-quantitative studies, the intensity of immunoreactive bands was measured by densitometry using Science Lab Image Gauge v 4.0 software provided by FUJIFILM.
Immunoprecipitations were performed at 4°C by incubating 150 μL of CSF overnight with the primary N-terminal PS1 antibody 98/1, or alternatively with an antibody from Thermo Scientific, previously coupled to protein A-Sepharose by Dimethyl pimelimidate dihydrochloride (Sigma-Aldrich Co). Precipitated proteins were washed with PBS and eluted with 0.1 M glycine buffer at pH 2.5. After pH neutralization, supernatants were denatured in Laemmli sample buffer at 50°C for 15 min and subjected to SDS-PAGE, and separated proteins were transferred to nitrocellulose membranes. Blots were incubated with N-terminal (Calbiochem) and C-terminal (00/2) PS1 antibodies.
PS1 complexes were analysed by ultracentrifugation at 250,000 × g in a continuous sucrose density gradient (5-20%) for 4 hr at 4°C in a Beckman TLS 55 rotor. CSF aliquots (50 μL) were carefully loaded onto the top of the gradient containing 2 mL of 0.15 M NaCl, 50 mM MgCl2 and 0.5% Brij 97, in 50 mM Tris-HCl (pH 7.4). After centrifugation ~14 fractions were gently collected from the top of the tubes. Enzyme markers of known sedimentation coefficient, β-galactosidase, catalase and alkaline phosphatase were used in the gradients to determine the approximate sedimentation coefficients.
Measurement of γ-secretase-mediated peptide cleavage
γ-Secretase activity was assayed as reported elsewhere  using an intramolecularly quenched fluorogenic peptide probe, in the absence or presence of the γ-secretase inhibitor L-685,458 (10 μM). Membranes prepared from human brain solubilized in assay buffer containing 1% CHAPSO were used as positive controls . Background fluorescence of the peptide probe was subtracted from all readings.
Measurement of T-tau, P-tau and Aβ42by ELISA
Total tau (T-tau), phosphorylated tau (P-tau) and Aβ1-42 (Aβ42) in CSF were determined using specific enzyme-linked immunosorbent assays (ELISA) (Innogenetics, Ghent, Belgium).
All data were analyzed in SigmaStat (Version 2.0; SPSS Inc.) by Student’s t test (two-tailed) or Mann-Whitney U test for single pair-wise comparisons and determination of exact p values. Results are presented as means ± SEM. Correlation between variables was assessed by linear regression analyses. p values < 0.05 were considered significant.
This study was approved by the ethics committee of the Miguel Hernandez University and was carried out in accordance with the Declaration of Helsinki.
anterior pharynx-defective 1
beta-site APP cleaving enzyme 1
Presenilin enhancer 2
Standard error of mean
We thank Dr. J. Culvenor and G. Evin (Department of Pathology, The University of Melbourne, Australia) for advice and the generous gift of PS1 antibodies. We also thank Dr. I. Torres-Aleman and L. Guinea (Cajal Institute, Madrid, Spain) for technical assistance in mouse CSF extraction; Ana Belen Rebolledo (Fundación Hospital Alcorcón, Madrid, Spain) for helping us to obtain post-mortem CSF samples and Dr. José Francisco Sánchez (Hospital General Universitario Elche, Spain) for assistance with lumbar CSF samples.
This work was supported by grants from Fundación CIEN-Reina Sofía, FIS (PS09/00684; PI11/03026) and CIBERNED, ISC-III from Spain to JSV, and FIS (CP11/00312) to MSGA; and is part of the BIOMARKAPD Project in the frame of the Joint Programming Neurodegenerative Disease (JPND). MLC is supported by a Consolider-Predoctoral fellowship from the CSIC, Spain, co-financed by the Fondo Social Europeo (FSE), E.C.
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