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Table 3 Functional Epigenetic Modules

From: Epigenetic modulation of AREL1 and increased HLA expression in brains of multiple system atrophy patients

Fraction

Seed

P value

Function

5mC

FCER1G

0.006

Antibody-binding receptor

ELN

0.011

Elastic fiber formation

MDFI

0.012

Repression of myogenesis

TNF

0.035

Cytokine

DNMT3B

0.038

DNA methyltransferase

VAMP8

0.047

Synaptic vesicle function

5hmC

GRK2

0.004

GPCR

SNRPB

0.008

Ribonucleoprotein

SSTR3

0.009

Somatostatin receptor

ITGA4

0.019

Lymphocyte homing receptor

ZBTB16

0.023

Zinc finger transcription factor

  1. Summarization of identified functional epigenetic modules calculated for both the 5-methylcytosine (5mC) and the 5-hydroxymethylcytosine (5hmC) fractions. Seed: Center gene of module