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Table 1 Comparison of microarray and QPCR measurements on homogenates of cortical gray matter derived from the Control versus Edema and Control versus Pressure groups of patients

From: Human neuronal changes in brain edema and increased intracranial pressure

Gene symbol

Microarray

QPCR

Log2 change ([odema] vs [cont])

p value (OneWay Welch ANOVA)

Fold change

Regulation

Log2 change (ΔΔCt [odema] vs [cont])

p value (Student’s ttest)

Fold change

Regulation

 

Control versus Edema

AQP1

1.71

0.0383

3.26

up

5.20

0.0000

36.85

up

AQP3

2.28

0.0007

4.87

up

3.02

0.0005

8.11

up

CACNA1B

−1.06

0.0282

−2.09

down

−2.71

0.0025

−6.55

down

CRH

−2.82

0.0000

−7.06

down

−3.59

0.0046

−12.00

down

DRD5

−1.17

0.0037

−2.26

down

−3.32

0.0045

−9.98

down

GABRA4

−2.12

0.0091

−4.36

down

1.02

0.1008

2.03

up

GNRH1

−0.35

0.0629

−1.28

nc

−2.14

0.0309

−4.42

down

GRIA3

−1.34

0.0132

−2.53

down

−2.59

0.0058

−6.03

down

GRID1

−1.12

0.0230

−2.17

down

0.42

0.6465

1.34

nc

HMOX1

1.68

0.0013

3.21

up

2.57

0.0035

5.93

up

KCNN4

1.58

0.0002

2.99

up

1.63

0.0434

3.09

up

KCTD12

1.06

0.0025

2.09

up

0.34

0.6573

1.27

nc

NEUROD6

−2.37

0.0020

−5.17

down

−0.16

0.8805

0.89

nc

NPY1R

−1.61

0.0122

−3.06

down

−1.55

0.0069

−2.93

down

SCN3B

1.33

0.0235

2.52

up

2.07

0.0057

4.20

up

SOD2

1.01

0.0030

2.02

up

3.33

0.0014

10.06

up

 

Control versus Pressure

AQP1

0.13

0.0383

1.09

nc

4.78

0.0015

27.38

up

GRIK4

0.18

0.0237

1.13

nc

−2.44

0.0144

−5.41

down

HTR5A

1.20

0.0178

2.29

up

1.44

0.0221

2.71

up

KCNAB3

0.90

0.0008

1.86

up

1.52

0.0279

2.87

up

KCNS1

1.09

0.0200

2.14

up

3.05

0.0006

8.25

up

KCNS3

1.09

0.0024

2.13

up

0.77

0.5766

1.71

nc

PVALB

1.16

0.0011

2.24

up

2.02

0.0056

4.04

up

SLC2A3

−0.37

0.0231

−1.30

nc

−1.21

0.0267

−2.31

down

SLC2A9

−0.22

0.4318

−1.16

nc

−2.01

0.0056

−4.02

down