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Table 3 Common neurodegeneration module (CNM) genes

From: Integrated multi-cohort transcriptional meta-analysis of neurodegenerative diseases

Up-regulated

Down-regulated

NUPR1

CXCR4

RGS4

PSMC3

OXCT1

ATP5C1

DLG3

NXT1

ELF1

DCLK1

PDHB

ATP6V1A

PPEF1

RPL15

MT2A

CEBPB

PCP4

PLCB1

HARS

RTN3

COQ7

ITPKB

RAB7L1

INA

GABRA1

RFK

TUBG2

ACSL6

MT1X

THOC1

ATP6V1G2

HMP19

NEDD8

AP3B2

RFC3

MT1H

IFITM3

TAC1

TAGLN3

RNMT

CEP170B

COPS8

AEBP1

IFITM2

REEP1

NDN

CACNB1

FIS1

API5

MT1F

SLCO4A1

SCG3

G3BP2

LANCL1

MKKS

GLYR1

HSPB1

TIPARP

CHGB

UBE2N

TCEAL4

ACP1

CLASP2

TNFRSF1A

LRP10

SST

CDK5

NLK

TIMM17A

LRRC8B

FAM107A

NPC2

PCSK1

RPA3

RTCA

PSMD1

 

NFKBIA

TREM2

HIGD1A

KIFAP3

PPP3CB

CHN1

 

BCL6

IFI30

MOAP1

PEX11B

RNF11

RAB3B

 

KCNE4

EFNA1

PTS

SLC30A9

BBS7

MICAL2

 

ACP5

CASP6

GNG3

SLC4A1AP

LRPPRC

NRXN1

 

FSTL1

ITPKC

MLLT11

STMN2

NDUFAB1

PGRMC1

 

CHSY1

CD37

ATXN10

PFDN1

GABRG3

DYNC1LI1

 

PTBP1

YBX1

PIN1

NRIP3

PTPRN2

TOR1A

 

HSPB8

LHFPL2

DYNC1I1

CDK5R2

TXNDC9

ACLY

 

MSN

YBX3

GOT1

ATP6V0E2

TUBA4A

PDE2A

 

CCL2

TMBIM1

CNIH3

MAGED1

STXBP1

IMMT

 

SERPINA3

CTBP2

TM7SF2

FAM188A

GHITM

ASMTL

 

PHF10

CFI

RAP1GDS1

ITFG1

RAB6A

NAP1L2

 

TNIP2

DRAM1

ATP5B

HLF

BPGM

STAU2

 

PALLD

VAMP8

SCG5

TBC1D9

ALDH1A3

SERINC3

 

BAG3

CDKN1A

TCEB1

NDUFA9

CALM1

FEN1

 

MID1IP1

MS4A6A

COX8A

TMEFF1

SERPINI1

CXADR

 

EMP3

RBBP6

FGF12

SNX4

FIBP

ARHGAP44

 

CLIC1

CSF1

TSPYL5

DIRAS2

ATP5A1

EIF4H

 

INHBB

TGM2

FAM216A

MRPS33

PEX19

CD200

 

DDAH2

SLA

SYT1

OAT

LARGE

PTP4A1

 

HMOX1

TRAF3IP2

COPS3

LANCL2

CYCS

RTN1

 

MTHFD2

FBLN1

POP4

ISCA1

GRIK1

MAGI1

 

SYNM

 

NEFL

PAK6

ARL4D

KHDRBS1

 

ERBB2IP

 

B4GALT6

MTCH2

PPP1R2

CNTNAP2

 

CMTM6

 

NDRG3

CAP2

MPC2

TCEA2

 

PIM1

 

NBEA

GABRD

SLC1A1

TNFRSF21

 

BTG1

 

TASP1

ENO2

C11orf24

SNAPC5

 

CTDSP2

 

DLD

SAMM50

AP3M2

ELAVL4

 

TNFRSF12A

 

ARHGEF9

FGF13

PJA2

MEAF6

 
  1. Genes are listed from largest absolute meta-effect size to smallest, top-to-bottom, left-to-right. Genes NOT correlated with age shown in bold. See Additional file 1: Table S4 for details.