Differentially expressed mTOR-related genes in either mild or advanced AD. Heat map visualising the expression level of the 98 genes that were either differentially expressed in mild AD (17 genes) or in advanced AD (81 genes) only. The cut-off point for differential expression was <10% FDR. The heat map was generated with Cluster and Treeview, with complete hierarchical clustering by gene and array. The expression level of each gene relative to the median expression of the gene across all samples is represented on a red-green colour scale. The colours represent the log ratio of gene expression in an individual patient. Downregulated genes are represented in green (saturated green: log ratios −3.0 and below) while upregulated genes are represented in red (saturated red: log ratios 3.0 and above). Cells with log ratios of 0 (gene expression unchanged) are black. The arrays are identified by the patient codes that are described in Additional file 2: Table S1 (C: Control, L: Limbic stage AD, N: Neocortical stage AD) while the genes are identified by the gene name.