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Table 3 Proteins differentially expressed between FTLD-TDP-GRNlτ and FTLD-TDPτ

From: Reduced Tau protein expression is associated with frontotemporal degeneration with progranulin mutation

Spot n°

Protein name

Accession No.

Gene name

p-value

Fold change

Theoretical pI/MW

Apparent pI/MW

Mascot score

% sequence coverage

 308

Gelsolin

P06396

GSN

0.001

+1.4

5.9/85

5.9/85

77

1.4

 436

Neurofilament light polypeptide

P07196

NEFL

4.57E-04

- 1.5

4.5/61.5

4.5/61.5

202

34.3

Metabolism related proteins

 780

Glyceraldehyde-3-phosphate dehydrogenase (2)

P04406

GAPDH

0.001

+1.3

8.6/36

8.4/36

63.5

21.2

 1040

Ferritin light subunit

P02792

FTL

3.67E-06

+2.2

5.4/20

5.4/20

354.5

30.3

 738

Fructose 1.6 biphosphate aldolase

P04075

ALDOA

0.0037

+1.2

9.2/39.4

9.2/39.4

81

33.5

 639

Alpha-enolase

P06733

ENO1

1.57E-04

+1.9

7.7/47.1

7.7/47.1

178

44.5

 1033

Phosphatidylethanolamine-binding protein 1

P30086

PEBP1

0.007

+1.3

7.4/21

8.4/21

101

56.7

 956

Peroxiredoxin 6

P30041

PRDX6

1.94E-05

+1.9

6.3/25

7.0/25

147

52.2

 523

Pyruvate Kinase M (2)

P14618

PKM

0.019

+1.2

9.0/60

8.4/60

93.9

31.8

 708

Phosphoglycerate kinase 1

P00558

PGK1

0.023

+1.2

9.2/45

9.2/45

95.2

29.5

 770

N(G).N(G)-dimethylarginine dimethylaminohydrolase 1

O94760

DDAH1

4.36E-04

+1.3

5.5/31.1

5.8/43

121

44.6

 838

Guanine nucleotide-binding protein 1

P62873

GNB1

7.02E-05

- 1.6

5.6/37

5.6/37

117

42.9

 714

Creatine Kinase B

P12277

CKB

0.004

- 1.2

5.2/42.6

5.6/42.6

206

54.9

Astrocytic related proteins

 618

Glial fibrillary acidic protein (3)

P14136

GFAP

2.43E-06

+3.2

5.3/49.8

5.5/49.8

287

56.4

 689

Glutamine synthetase

P15104

GLUL

0.003

- 1.2

6.5/42

7.2/42

69.4

16.4

Synaptic related proteins

 476

Dihydropyrimidinase-related protein 2 (2)

Q16555

DPYSL2

4.62E-04

- 1.3

5.9/62.3

6.6/62.3

274

50.1

 448

Syntaxin-binding protein 1 (2)

P61764

STXB1

3.70E-04

- 1.3

6.5/67.5

7.6/60

138

22.6

Other

 883

Annexin 5

P08758

ANXA5

1.75E-04

+1.5

4.8/35.9

4.8/35.9

188

45.6

 976

Ubiquitin carboxyl-terminal hydrolase isoenzyme L1

P09936

UCHL1

0.003

- 1.3

5.2/25

5.2/25

85.8

47.1

 430

Heat shock 70 kDa protein 1A

P0DMV8

HSPA1A

0.002

+1.3

5.4/70

5.4/60

110

27.9

  1. Data obtained from Samespot software are presented for each spot of interest: spot number, p-value, fold change (FTLD-TDP-GRNlτ vs FTLD-TDPτ), experimental molecular weight (MW) and isoelectric point (pI). According to mass spectrometry identification of each protein, table also gives: the protein full name, accession number, gene name, mascot score, sequence coverage (%), and the theoretical molecular weight (MW) and pI of the non-modified protein. A mascot score above 61 was considered as significant for protein identification. Difference between theoretical and experimental molecular weight or pI is underlined. Number of isovariants for each protein spot is indicated with the protein name (see parenthesis)